| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra010065 |
| Family | GT47 |
| Protein Properties | Length: 525 Molecular Weight: 60420.2 Isoelectric Point: 7.3637 |
| Chromosome | Chromosome/Scaffold: 06 Start: 19106100 End: 19107674 |
| Description | glycosyltransferase 18 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT47 | 126 | 467 | 0 |
| ETGRVLVYDTPEIFNEVILQECDNLNPWSSRCDALSNDGFGKEATSLKGVIPDDLVPSWFWTDQFVSEIIFHNRILNHRCRTYDPESATAFYIPFYAGLA VGQYLWSNYAAADRDRHCKMMTEWVREQPYWNRSNGWDHFITMGRITWDFRRTKDEDWGSNCIYIPGMRNITRLLIERNSWDHFDVGVPYPTGFHPRSDS DVVKWQDFVRNRHRKTLFCFAGAPRAGIQNDFRGMLLDHCKESQGACRTVDCTGGKCSNGSSAILETFLGSDFCLQPRGDSFTRRSIFDCMLAGSIPVFF WRRTAYMQYQWFLPKELGSYSVYIDRNEVKNGTTSIKEVLER | |||
| Full Sequence |
|---|
| Protein Sequence Length: 525 Download |
| MLPVSNPTSP ERLLKKSRTP DKTTTDTDQK ISFNSVGNSS ANRSASRSHC TWLILSLLCL 60 QLILFLTLRS IASPSRRPPE NFPPPAVSVS VSSIESLFTS DEPLLTSDES LPTRTRSEPD 120 DSGRCETGRV LVYDTPEIFN EVILQECDNL NPWSSRCDAL SNDGFGKEAT SLKGVIPDDL 180 VPSWFWTDQF VSEIIFHNRI LNHRCRTYDP ESATAFYIPF YAGLAVGQYL WSNYAAADRD 240 RHCKMMTEWV REQPYWNRSN GWDHFITMGR ITWDFRRTKD EDWGSNCIYI PGMRNITRLL 300 IERNSWDHFD VGVPYPTGFH PRSDSDVVKW QDFVRNRHRK TLFCFAGAPR AGIQNDFRGM 360 LLDHCKESQG ACRTVDCTGG KCSNGSSAIL ETFLGSDFCL QPRGDSFTRR SIFDCMLAGS 420 IPVFFWRRTA YMQYQWFLPK ELGSYSVYID RNEVKNGTTS IKEVLERFSK EDVRRMREKV 480 IELIPNLVYA KSLNGLETFK DAFDVALDGV FRRFKEQENW YKWR* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 1.0e-59 | 175 | 468 | 309 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA97186.1 | 0 | 1 | 522 | 1 | 515 | unnamed protein product [Arabidopsis thaliana] |
| RefSeq | NP_201028.1 | 0 | 1 | 524 | 1 | 517 | exostosin family protein [Arabidopsis thaliana] |
| RefSeq | XP_002270309.1 | 0 | 1 | 523 | 1 | 489 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002318866.1 | 0 | 1 | 523 | 1 | 512 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002510893.1 | 0 | 1 | 523 | 1 | 497 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY290373 | 364 | 143 | 506 | 0 |
| EX091911 | 261 | 236 | 496 | 0 |
| DY267021 | 343 | 164 | 506 | 0 |
| DK561202 | 251 | 275 | 525 | 0 |
| BU238022 | 260 | 266 | 525 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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