| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra010102 |
| Family | GT31 |
| Protein Properties | Length: 489 Molecular Weight: 55684.6 Isoelectric Point: 6.9409 |
| Chromosome | Chromosome/Scaffold: 06 Start: 19425844 End: 19427793 |
| Description | Galactosyltransferase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT31 | 254 | 435 | 0 |
| ERMAGRKSWMEHKLVKSSKVVARFFVALHTRKEVNVELKKEAEFFGDIVIVPYMDSYDLVVLKTVAICEYGAHQLAAKYIMKCDDDTFVQVDAVLSEVKR TPANRSLYIGNINYYHKPLRQGKWAVTYEEWPEEDYPPYANGPGYILSNDISRFIVKEFEKHKLRMFKMEDVSVGMWVEQFN | |||
| Full Sequence |
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| Protein Sequence Length: 489 Download |
| MELPCGLTLG SHITVVGKPR GAHSEKDPKI SMLKEGEVSQ FKLELQGLKA VDGEEPPRIL 60 HLNPRLKGDW SGKPVIEQNT CYRMQWGSAQ RCEGWRSRDD EETVDGQVKC EKWVRDDSIA 120 SKEEPSKADT WWLSRLVGRS KRVTVEWPFP FTVDKLFVLT LSAGLEGFHV SVDGKHVTSF 180 PYRTGFTLED ATGLTINGDI DVHSVFAGSL PTSHPSFSPQ RYLELSSNWQ APSLPDEQVD 240 MFIGILSAGN HFAERMAGRK SWMEHKLVKS SKVVARFFVA LHTRKEVNVE LKKEAEFFGD 300 IVIVPYMDSY DLVVLKTVAI CEYGAHQLAA KYIMKCDDDT FVQVDAVLSE VKRTPANRSL 360 YIGNINYYHK PLRQGKWAVT YEEWPEEDYP PYANGPGYIL SNDISRFIVK EFEKHKLRMF 420 KMEDVSVGMW VEQFNNGTKP VDYIHSLKFC QFGCIENHLT AHYQSPRQMI CLWDKLVLTG 480 KPQCCNMR* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00908 | Gal-bind_lectin | 2.0e-18 | 4 | 205 | 202 | + Galactoside-binding lectin. Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction. | ||
| cd00070 | GLECT | 5.0e-19 | 3 | 206 | 204 | + Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation. | ||
| pfam01762 | Galactosyl_T | 1.0e-19 | 253 | 432 | 191 | + Galactosyltransferase. This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2. | ||
| pfam00337 | Gal-bind_lectin | 7.0e-24 | 1 | 205 | 205 | + Galactoside-binding lectin. This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5). | ||
| PLN03133 | PLN03133 | 2.0e-122 | 1 | 488 | 498 | + beta-1,3-galactosyltransferase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0006486 | protein glycosylation |
| GO:0008378 | galactosyltransferase activity |
| GO:0016020 | membrane |
| GO:0016757 | transferase activity, transferring glycosyl groups |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD55296.1 | 0 | 1 | 488 | 163 | 642 | AC008263_27 ESTs gb |
| DDBJ | BAA97209.1 | 0 | 1 | 488 | 189 | 681 | unnamed protein product [Arabidopsis thaliana] |
| RefSeq | NP_177618.2 | 0 | 1 | 488 | 193 | 672 | galactosyltransferase family protein [Arabidopsis thaliana] |
| RefSeq | NP_201068.1 | 0 | 1 | 488 | 189 | 681 | galactosyltransferase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002511491.1 | 0 | 1 | 488 | 183 | 670 | galactosyltransferase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX131848 | 315 | 14 | 328 | 0 |
| EX133690 | 267 | 22 | 288 | 0 |
| EX133049 | 282 | 145 | 426 | 0 |
| DY268182 | 364 | 19 | 377 | 0 |
| HO799491 | 319 | 62 | 380 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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