| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra010189 |
| Family | GT5 |
| Protein Properties | Length: 733 Molecular Weight: 80771.3 Isoelectric Point: 9.5105 |
| Chromosome | Chromosome/Scaffold: 06 Start: 20729890 End: 20733310 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 209 | 704 | 0 |
| IFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTVCPRYDQYKDAWDTCVVVQIKVGDKVEDVRFFHCYKRGVDRVFVDHPLFLAKVVGKTGSKIYGP ITGVDYTDNQLRFSLLCQAALEAPRVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSVYQSRGIYMNAKVVFCIHNIAYQGRFAFDDFSLLNLPDS FKSSFDFMDGYEKPVKGRKINWMKAAILEAWRVLTVSPYYAQELISGIDRGVELHSYLRMKTVSGIINGMDVQEWNPATDKYIDIKYDITTVTEAKPLIK EALQAAVGLPVDRDVPVIGFIGRLEEQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNVPLAHMITAGADFIIVPSRFE PCGLIQLHAMRYGTVPIVASTGGLVDTVKDGFTGFHIGRFNVKCEVVDPDDVIATAKAVARAVAVYGTPAMKEMVKNCMDQDFSWKGPARLWEKVL | |||
| Full Sequence |
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| Protein Sequence Length: 733 Download |
| MTKKYRPSIK QMGQEEMSSK DTFKVHDDKQ NTSITTGPTN WAMFRGKSQP WILSKWKKRT 60 HENANSTTVI TPRVKFGQSS FHSPLYINGP PSSSFSPHLS RCLITSSSVK RVSLSRKMAY 120 VTASHFVSLV NNNHGGASGS EANANLSQIS FKCQSMTHCG LRSFNMVDRL QRRCQAKAVS 180 AKSSKGLQQN APKAKRVGKI VCEKGMSMIF IGAEVGPWSK TGGLGDVLGG LPPALAARGH 240 RVMTVCPRYD QYKDAWDTCV VVQIKVGDKV EDVRFFHCYK RGVDRVFVDH PLFLAKVVGK 300 TGSKIYGPIT GVDYTDNQLR FSLLCQAALE APRVLNLNSS KYFSGPYGED VVFVANDWHT 360 ALLPCYLKSV YQSRGIYMNA KVVFCIHNIA YQGRFAFDDF SLLNLPDSFK SSFDFMDGYE 420 KPVKGRKINW MKAAILEAWR VLTVSPYYAQ ELISGIDRGV ELHSYLRMKT VSGIINGMDV 480 QEWNPATDKY IDIKYDITTV TEAKPLIKEA LQAAVGLPVD RDVPVIGFIG RLEEQKGSDI 540 LVEAISKFMG LNVQMVILGT GKKKMEAQIL ELEEKFPGKA VGVAKFNVPL AHMITAGADF 600 IIVPSRFEPC GLIQLHAMRY GTVPIVASTG GLVDTVKDGF TGFHIGRFNV KCEVVDPDDV 660 IATAKAVARA VAVYGTPAMK EMVKNCMDQD FSWKGPARLW EKVLLSLDVA GSEAGVEGEE 720 IAPLAKENVA TP* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 2.0e-82 | 302 | 707 | 414 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 7.0e-103 | 206 | 697 | 510 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 2.0e-124 | 206 | 698 | 503 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 9.0e-163 | 206 | 707 | 508 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-168 | 210 | 704 | 508 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACJ11751.1 | 0 | 118 | 732 | 1 | 609 | granule bound starch synthase [Gossypium hirsutum] |
| GenBank | ACV72639.1 | 0 | 118 | 732 | 1 | 609 | granule-bound starch synthase 1 [Gossypium hirsutum] |
| RefSeq | NP_174566.1 | 0 | 118 | 732 | 1 | 610 | starch synthase, putative [Arabidopsis thaliana] |
| Swiss-Prot | O82627 | 0 | 118 | 732 | 1 | 608 | SSG1_ANTMA RecName: Full=Granule-bound starch synthase 1, chloroplastic/amyloplastic; AltName: Full=Granule-bound starch synthase I; Short=GBSS-I; Flags: Precursor |
| RefSeq | XP_002300507.1 | 0 | 118 | 732 | 1 | 610 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 206 | 732 | 10 | 536 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3vue_A | 0 | 206 | 732 | 10 | 536 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 206 | 707 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 206 | 709 | 1 | 478 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 206 | 709 | 1 | 478 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| AJ568414 | 617 | 118 | 733 | 0 |
| CN831271 | 382 | 352 | 733 | 0 |
| HO629148 | 603 | 136 | 733 | 0 |
| HO825853 | 518 | 214 | 731 | 0 |
| HO778340 | 399 | 177 | 573 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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