| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra010330 |
| Family | CBM43 |
| Protein Properties | Length: 524 Molecular Weight: 56072.3 Isoelectric Point: 4.6357 |
| Chromosome | Chromosome/Scaffold: 08 Start: 13899454 End: 13901690 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 377 | 459 | 4e-30 |
| WCVASSQASVTELQSALDWACGPGNVDCSAVQPNQPCFEPDTVLSHASYAFNTYYQQSGGSSLDCSFGGVSVEVDKDPSYGNC | |||
| GH17 | 16 | 334 | 0 |
| IGICYGRNADNLPSPNKVSELIQHLNIKFVRIYDYNIDVLKAFANTNIELMIGVPNADLLAFAQFQSNVDTWLRNNILPYYPTTKITSISVGLEVTEAPD NATGLVLPAMQNIHTALKKAGLDKKIKISSSHSLAILSRSFPPSSATFSKKHSAFLKPMLEFLVENDSPFMIDLYPYYAYRDSAEKVQLEYALFESSSQV VDPATGLLYSNMFDAQLDAVYFALTAMNFKSVKVMVTESGWPSKGSPKETAATPDNALAYNTNLIRHVIGDPGTPAKPGEEIDVYLFSLFNENRKPGMES ERNWGMFYANGTSVYALDF | |||
| Full Sequence |
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| Protein Sequence Length: 524 Download |
| MSLFKTVAEL GAASNIGICY GRNADNLPSP NKVSELIQHL NIKFVRIYDY NIDVLKAFAN 60 TNIELMIGVP NADLLAFAQF QSNVDTWLRN NILPYYPTTK ITSISVGLEV TEAPDNATGL 120 VLPAMQNIHT ALKKAGLDKK IKISSSHSLA ILSRSFPPSS ATFSKKHSAF LKPMLEFLVE 180 NDSPFMIDLY PYYAYRDSAE KVQLEYALFE SSSQVVDPAT GLLYSNMFDA QLDAVYFALT 240 AMNFKSVKVM VTESGWPSKG SPKETAATPD NALAYNTNLI RHVIGDPGTP AKPGEEIDVY 300 LFSLFNENRK PGMESERNWG MFYANGTSVY ALDFTGESAV PGPVSPSNST TGVSPSPGDN 360 GNSTVTIGGG GGGAKKWCVA SSQASVTELQ SALDWACGPG NVDCSAVQPN QPCFEPDTVL 420 SHASYAFNTY YQQSGGSSLD CSFGGVSVEV DKDPSYGNCL YMIAPSTDGM NRTMAGNITG 480 NITAIDSPLA SPSTSNEGIR QMVVSVAVSA LLPCFVVSLS LLW* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 1.0e-5 | 247 | 325 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-18 | 376 | 446 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 5.0e-37 | 376 | 461 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 6.0e-102 | 16 | 334 | 319 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB79694.1 | 0 | 13 | 521 | 2 | 511 | beta-1, 3-glucanase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_567828.3 | 0 | 10 | 455 | 21 | 469 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_849556.1 | 0 | 10 | 521 | 21 | 533 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002283473.1 | 0 | 14 | 477 | 24 | 461 | PREDICTED: similar to beta-1,3-glucanase [Vitis vinifera] |
| RefSeq | XP_002514201.1 | 0 | 1 | 480 | 11 | 466 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 16 | 334 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 16 | 335 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0 | 16 | 335 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur7_B | 0 | 16 | 335 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 16 | 335 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FD577334 | 242 | 208 | 449 | 0 |
| EE522940 | 245 | 280 | 524 | 0 |
| EV071287 | 228 | 156 | 383 | 0 |
| DR946401 | 312 | 119 | 430 | 0 |
| FD577334 | 18 | 452 | 469 | 0.61 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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