| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra010624 |
| Family | PL4 |
| Protein Properties | Length: 1140 Molecular Weight: 129027 Isoelectric Point: 10.0596 |
| Chromosome | Chromosome/Scaffold: 08 Start: 15643713 End: 15654380 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 49 | 234 | 4.10006e-41 |
| NQVVVDNGIIQVTFSNPSGLITGIKYNGFNNVLNDKIEDRGLKGEKIDIINQTSEHVEISFSRTWTMARRGSIAPLNVDKRFDFMAISDNRQKVMPSDAD RNINNGTAAPLAYKEAVRLMNPQNHTLKGQVDDKYMYSMESKDNKVHGWISSDQRVGFWMITPSDEFRACGPVKQDLTSHVGPTVL | |||
| PL4 | 235 | 480 | 0 |
| SGYQFWTRADKRGRFAIANVRPGSYSLYAWVVGFIGDYKYERDIIITPGKEINVGPIVYDPPRNGPTLWEIGVPDRTAAEFNIPDPDPTLLTKLYLSNAN PSQDRFRQYGLWNRYSVLYPRKDLVFTAGVSDYKKDWFYAHVNRYSGKEKYQATTWKIVFNLKTMIKTGNYTLRMALAAATNADLFVRVNKANSNPIFTS GLIGRDNAIARHGIHGLYRLYNIDVQRKLLRVGDNTFFLTQNRNTS | |||
| PL4 | 505 | 1117 | 0 |
| NNAAVTVNTSGGKQVVVDNGIIQATFSNPAGLVTGIKYKGFDNVLNARIQNRVYWDIVWYEPGQVSQTDYLIGEKFKIISQTSEQVEISFSKTWDTSRRG STVPLNVDKRYIIRRGVSGVYMYGVVERLKGWPAVTMDQTRIVYKLNSTKFDYMAVADHRQNLMPLEADRNLTDGSAATLEYKEAVRLVKPRNKLFKGQV DDKYLYSMEGKDNRLHGWIASEQRVGFWITTASNEFRTCGPVKQELTSHVGPTLLSMFTSTHYAGKELNTTYASDVPWKKMFGPVFVYLNSAPSHDLMWT DAKRQLAAEVKSWPYDFVKSVDYPLRQQRGTVKGQLSVMDSFKSKSKLNGEFAFVGLALPGEVGSWQTENKGYQFWTKADKMGMFTIANVRPGTYNLFAW APGHIGDYKYEREIIITPGKAINVGSLVYEPPRSGPTLWEIGVPDRTALEFNIPDPDPALVTKLYANHPNAPEDRFRQYGLWDRYKVSYPREDVTFTVGV SDYKKDWFFAHLNRRAGEKKLQATTWKIVFNLKQVSQTGNYTLRMALAAANTADILVRVNEPSSKPMFRTGLVGRDNAIARHGIHGLYRLFNIGVQRNLL KVGDNTIFLTQNR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1140 Download |
| MARVMTQVFV LIFLLQGVHS RTSRNKSNIA KPGQNLASPP VTLKKIGLNQ VVVDNGIIQV 60 TFSNPSGLIT GIKYNGFNNV LNDKIEDRGL KGEKIDIINQ TSEHVEISFS RTWTMARRGS 120 IAPLNVDKRF DFMAISDNRQ KVMPSDADRN INNGTAAPLA YKEAVRLMNP QNHTLKGQVD 180 DKYMYSMESK DNKVHGWISS DQRVGFWMIT PSDEFRACGP VKQDLTSHVG PTVLSGYQFW 240 TRADKRGRFA IANVRPGSYS LYAWVVGFIG DYKYERDIII TPGKEINVGP IVYDPPRNGP 300 TLWEIGVPDR TAAEFNIPDP DPTLLTKLYL SNANPSQDRF RQYGLWNRYS VLYPRKDLVF 360 TAGVSDYKKD WFYAHVNRYS GKEKYQATTW KIVFNLKTMI KTGNYTLRMA LAAATNADLF 420 VRVNKANSNP IFTSGLIGRD NAIARHGIHG LYRLYNIDVQ RKLLRVGDNT FFLTQNRNTS 480 LFTGVMYDYL RLEGVHSRTL RSESNNAAVT VNTSGGKQVV VDNGIIQATF SNPAGLVTGI 540 KYKGFDNVLN ARIQNRVYWD IVWYEPGQVS QTDYLIGEKF KIISQTSEQV EISFSKTWDT 600 SRRGSTVPLN VDKRYIIRRG VSGVYMYGVV ERLKGWPAVT MDQTRIVYKL NSTKFDYMAV 660 ADHRQNLMPL EADRNLTDGS AATLEYKEAV RLVKPRNKLF KGQVDDKYLY SMEGKDNRLH 720 GWIASEQRVG FWITTASNEF RTCGPVKQEL TSHVGPTLLS MFTSTHYAGK ELNTTYASDV 780 PWKKMFGPVF VYLNSAPSHD LMWTDAKRQL AAEVKSWPYD FVKSVDYPLR QQRGTVKGQL 840 SVMDSFKSKS KLNGEFAFVG LALPGEVGSW QTENKGYQFW TKADKMGMFT IANVRPGTYN 900 LFAWAPGHIG DYKYEREIII TPGKAINVGS LVYEPPRSGP TLWEIGVPDR TALEFNIPDP 960 DPALVTKLYA NHPNAPEDRF RQYGLWDRYK VSYPREDVTF TVGVSDYKKD WFFAHLNRRA 1020 GEKKLQATTW KIVFNLKQVS QTGNYTLRMA LAAANTADIL VRVNEPSSKP MFRTGLVGRD 1080 NAIARHGIHG LYRLFNIGVQ RNLLKVGDNT IFLTQNRVTS IFTGVMYDYL RLEGPSGAV* 1140 1200 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10320 | RGL4_N | 7.0e-31 | 49 | 235 | 237 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-43 | 11 | 179 | 228 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| cd10317 | RGL4_C | 4.0e-44 | 303 | 493 | 193 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 9.0e-64 | 516 | 796 | 287 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 9.0e-81 | 485 | 704 | 222 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_179847.1 | 0 | 236 | 493 | 418 | 672 | lyase [Arabidopsis thaliana] |
| RefSeq | NP_179847.1 | 0 | 505 | 1135 | 46 | 674 | lyase [Arabidopsis thaliana] |
| RefSeq | NP_195508.2 | 0 | 3 | 237 | 13 | 302 | lyase [Arabidopsis thaliana] |
| RefSeq | NP_195508.2 | 0 | 236 | 494 | 417 | 674 | lyase [Arabidopsis thaliana] |
| RefSeq | NP_195508.2 | 0 | 492 | 1138 | 25 | 678 | lyase [Arabidopsis thaliana] |
