| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra010630 |
| Family | PL4 |
| Protein Properties | Length: 901 Molecular Weight: 103342 Isoelectric Point: 8.9061 |
| Chromosome | Chromosome/Scaffold: 08 Start: 15689163 End: 15694229 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL4 | 46 | 641 | 0 |
| NKEVIVDNGIVRVTFSNPKGLITGIKYNEIGNVLNPHLRARGYWDITWQTENNSLPKLDRIEGTNFRIITQNEEQVEISFSRTWNGGSDHIPLNVDKRYI IRTNTSGIYTYGIFERQPEWPEVEMAQIRVAFKLNPDRFLYMVVADNRQRQMPTDDDRDINSGRAKPLAYKEAVQLTNPHNQMFKNQVDDKYQYSCEVKD NKVHGWISTNSNVGFWLISPSGEYRSGGPVKQELTSHVGPTTLTTFISQHYVGPDMETRYKTGEAWKKVLGPVFIYLNSDSTRNNLQHLLWEDAKRQTEQ EVEAWPYGFVASSDFPTRQERGTITGRLFVNDRFLAPAGYAYIGLAPPGEAGSWQTNTKGYQFWTQTNETGYFTIDNVRPGTYNLYGWVHGFIGDFKYQN LVNVAAGSEISLDRVVFQPPRNGPTLWEIGVPDRTAREYFVPEPYENTMNPLYLNHTDKFRQYGLWQRYTELYPNHDLVYTVGVSNYSQDWFYAHVTRNI GGSTYVPATWQIVFELPYVNWRGSYTLQIALASAARANLKVRFNNEYSRPLLSAGVGRDNAIARHGIHGAYHLYSIDVPGRLLRTGTNTIYLRQSK | |||
| PL4 | 640 | 880 | 0 |
| SKAGYQFWTQTNETGYFTIDNVRPGTYNLYGWVHGFIGDFKYQNLVNVAAGSEISLDRVVFQPPRNGPTLWEIGVPDRTAREYFVPEPYENTMNPLYLNH TDKFRQYGLWQRYTELYPNHDLVYTVGVSNYSQDWFYAHVTRNIGGSTYVPATWQIVFELPYVNWRGSYTLQIALASAARANLKVRFNNEYSRPLLSAGV GRDNAIARHGIHGAYHLYSIDVPGRLLRTGTNTIYLRQSKA | |||
| Full Sequence |
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| Protein Sequence Length: 901 Download |
| MISQKTIASW MICFLLLLLL PIAFSEPTRN LKGTNARAPT VQQIRNKEVI VDNGIVRVTF 60 SNPKGLITGI KYNEIGNVLN PHLRARGYWD ITWQTENNSL PKLDRIEGTN FRIITQNEEQ 120 VEISFSRTWN GGSDHIPLNV DKRYIIRTNT SGIYTYGIFE RQPEWPEVEM AQIRVAFKLN 180 PDRFLYMVVA DNRQRQMPTD DDRDINSGRA KPLAYKEAVQ LTNPHNQMFK NQVDDKYQYS 240 CEVKDNKVHG WISTNSNVGF WLISPSGEYR SGGPVKQELT SHVGPTTLTT FISQHYVGPD 300 METRYKTGEA WKKVLGPVFI YLNSDSTRNN LQHLLWEDAK RQTEQEVEAW PYGFVASSDF 360 PTRQERGTIT GRLFVNDRFL APAGYAYIGL APPGEAGSWQ TNTKGYQFWT QTNETGYFTI 420 DNVRPGTYNL YGWVHGFIGD FKYQNLVNVA AGSEISLDRV VFQPPRNGPT LWEIGVPDRT 480 AREYFVPEPY ENTMNPLYLN HTDKFRQYGL WQRYTELYPN HDLVYTVGVS NYSQDWFYAH 540 VTRNIGGSTY VPATWQIVFE LPYVNWRGSY TLQIALASAA RANLKVRFNN EYSRPLLSAG 600 VGRDNAIARH GIHGAYHLYS IDVPGRLLRT GTNTIYLRQS KAGYQFWTQT NETGYFTIDN 660 VRPGTYNLYG WVHGFIGDFK YQNLVNVAAG SEISLDRVVF QPPRNGPTLW EIGVPDRTAR 720 EYFVPEPYEN TMNPLYLNHT DKFRQYGLWQ RYTELYPNHD LVYTVGVSNY SQDWFYAHVT 780 RNIGGSTYVP ATWQIVFELP YVNWRGSYTL QIALASAARA NLKVRFNNEY SRPLLSAGVG 840 RDNAIARHGI HGAYHLYSID VPGRLLRTGT NTIYLRQSKA VGPFEGLMYD YIRLEEPSTA 900 * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 6.0e-31 | 365 | 457 | 93 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 8.0e-39 | 472 | 646 | 177 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 3.0e-46 | 710 | 895 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 3.0e-68 | 46 | 331 | 291 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 4.0e-80 | 31 | 233 | 206 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD94618.1 | 0 | 156 | 642 | 2 | 490 | LG127/30 like gene [Arabidopsis thaliana] |
| EMBL | CAB37543.1 | 0 | 1 | 642 | 1 | 629 | LG127/30 like gene [Arabidopsis thaliana] |
| EMBL | CAB37543.1 | 0 | 643 | 900 | 391 | 649 | LG127/30 like gene [Arabidopsis thaliana] |
| RefSeq | NP_195516.2 | 0 | 1 | 642 | 1 | 647 | lyase [Arabidopsis thaliana] |
| RefSeq | NP_195516.2 | 0 | 643 | 900 | 409 | 667 | lyase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3njx_A | 0.009 | 609 | 875 | 217 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
| PDB | 1nkg_A | 0.009 | 609 | 875 | 217 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
| PDB | 3njv_A | 0.01 | 609 | 875 | 217 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
