| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra010733 |
| Family | GH10 |
| Protein Properties | Length: 565 Molecular Weight: 63503.6 Isoelectric Point: 5.524 |
| Chromosome | Chromosome/Scaffold: 08 Start: 16169726 End: 16172295 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 215 | 478 | 0 |
| QIAKDFPIGSAISKTILGNIPYQEWFVKRFDATVFENELKWYATEPHQGKLNYTFADQMMSFVRANRIIARGHNIFWEDPKYTPDWVRNLTGEDLRSAVN QRITSLMTRYRGEFVHWDVSNEMLHFDFYESRLGKNASYELFAAARELDSLATLFLNDFNVVETCSDERSTVDEYIARVKELERYDGGGMRMDGVGLEGH FTRPNVALMRANLDKLATLELPVWLTEIDISSTLDHRTQALYLEQVLREGFSHPSVNGIILWTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 565 Download |
| MKHSSIIGFI FCAIYSLLAA FILVSSSNDG PFYDSTAYTE CRAEPEKPLY NGGMLKGEEA 60 SGSGRDTLRS VGASYTPAYI LHNLTQNTIY CFSIWVKIEA GSASTARVRA KLRSDNATLN 120 CVGSVSAKQG CWSFLKGGFL LDSPSQLSIL FFETTNDDGK TQLEVASASL QPFTQDQWKN 180 NQDYFINTAR KRAVTIHVAG ENGESAEGAV VNVEQIAKDF PIGSAISKTI LGNIPYQEWF 240 VKRFDATVFE NELKWYATEP HQGKLNYTFA DQMMSFVRAN RIIARGHNIF WEDPKYTPDW 300 VRNLTGEDLR SAVNQRITSL MTRYRGEFVH WDVSNEMLHF DFYESRLGKN ASYELFAAAR 360 ELDSLATLFL NDFNVVETCS DERSTVDEYI ARVKELERYD GGGMRMDGVG LEGHFTRPNV 420 ALMRANLDKL ATLELPVWLT EIDISSTLDH RTQALYLEQV LREGFSHPSV NGIILWTALH 480 PNGCYQMCLT DDKFINLPAG DVVDKKLLEW TTGEVKAKTD DRGTFSFLGF LGEYRVSIIY 540 EGKTVNSSFS LSRDPETKHV RLRI* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 2.0e-34 | 215 | 445 | 246 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-55 | 214 | 476 | 280 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-74 | 253 | 503 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB37521.1 | 0 | 143 | 564 | 6 | 433 | putative protein [Arabidopsis thaliana] |
| EMBL | CBI37893.1 | 0 | 9 | 564 | 80 | 625 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_195577.2 | 0 | 20 | 564 | 19 | 562 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277675.1 | 0 | 24 | 564 | 19 | 549 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002534153.1 | 0 | 91 | 564 | 6 | 473 | Endo-1,4-beta-xylanase A precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 2e-29 | 222 | 476 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 3e-27 | 244 | 482 | 40 | 273 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1xyz_B | 7e-26 | 217 | 476 | 34 | 305 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 7e-26 | 217 | 476 | 34 | 305 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1x_A | 1e-25 | 244 | 509 | 40 | 303 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
