| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra010800 |
| Family | GH17 |
| Protein Properties | Length: 383 Molecular Weight: 42013.9 Isoelectric Point: 6.0321 |
| Chromosome | Chromosome/Scaffold: 08 Start: 16507740 End: 16509083 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH17 | 36 | 352 | 0 |
| LGINYGQVGDNLPPPDKVIQLLGSLHINKTRIYDTNPKVLSSFANSNIELFVTVENQMLPSLVDPQQALQWVTSRIKPFFPATKIGGIAVGNELYTDDDS SLIGYLVPAMTSIHAALVQTGLDKYIQVSTPNSLSVLQESYPPSAGCFRRQVTGVMTQLLSFLHSTKSPFWINAYPYFAYKDSPTKIPLDYVLFNPNPGM VDPYTKYHYDNMLYAQVDAVIFAMARLGFKDIEVGVSETGWPSKGDGDEVGATVANAAVYNKNLLKRQLQSEGTPLRKNMGLDVYLFALFNEDLKPGPTS ERNYGLYQPDETMAYNV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 383 Download |
| MSKMFSRIAM TNYVVVLLLS LTSLEHGLLF QRVSSLGINY GQVGDNLPPP DKVIQLLGSL 60 HINKTRIYDT NPKVLSSFAN SNIELFVTVE NQMLPSLVDP QQALQWVTSR IKPFFPATKI 120 GGIAVGNELY TDDDSSLIGY LVPAMTSIHA ALVQTGLDKY IQVSTPNSLS VLQESYPPSA 180 GCFRRQVTGV MTQLLSFLHS TKSPFWINAY PYFAYKDSPT KIPLDYVLFN PNPGMVDPYT 240 KYHYDNMLYA QVDAVIFAMA RLGFKDIEVG VSETGWPSKG DGDEVGATVA NAAVYNKNLL 300 KRQLQSEGTP LRKNMGLDVY LFALFNEDLK PGPTSERNYG LYQPDETMAY NVGLLSSSQS 360 STSSTNSIVS LTSSASTVCI NT* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 2.0e-5 | 267 | 345 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-92 | 36 | 352 | 318 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG52058.1 | 0 | 1 | 354 | 1 | 354 | AC022455_12 beta-1,3-glucanase precursor, putative; 75043-73120 [Arabidopsis thaliana] |
| GenBank | AAM96962.1 | 0 | 1 | 377 | 1 | 380 | putative beta-1,3-glucanase precursor [Arabidopsis thaliana] |
| RefSeq | NP_174300.2 | 0 | 1 | 377 | 1 | 380 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002270153.1 | 0 | 2 | 353 | 3 | 351 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002332000.1 | 0 | 1 | 378 | 1 | 374 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 36 | 354 | 2 | 315 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
| PDB | 3f55_C | 0 | 36 | 354 | 2 | 315 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
| PDB | 3f55_B | 0 | 36 | 354 | 2 | 315 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
| PDB | 3f55_A | 0 | 36 | 354 | 2 | 315 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
| PDB | 3em5_D | 0 | 36 | 354 | 2 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
