| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra010831 |
| Family | CBM43 |
| Protein Properties | Length: 289 Molecular Weight: 27248.5 Isoelectric Point: 3.9573 |
| Chromosome | Chromosome/Scaffold: 08 Start: 16685841 End: 16688028 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 142 | 223 | 3.7e-34 |
| WCIAKANASPTALQVALDYACGYGGADCGQIQQGASCYEPNTIRDHASFAFNSYYQKHPGSDSCNFGGAAQLTSTDPSKGSC | |||
| Full Sequence |
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| Protein Sequence Length: 289 Download |
| MIGLVSALDV IAQGGQGDIP VVNPTSPGGD TTTPTITQPS PPSSTFPGPV TNPNPPTGGY 60 PPLDGTTPTG GGYPPLDGTT PTGGGGYPPL DGTTPTGGGA PGGGGGDAGT GAGGGGGGAP 120 GGGGGGGDTG GGGGGGGGSG QWCIAKANAS PTALQVALDY ACGYGGADCG QIQQGASCYE 180 PNTIRDHASF AFNSYYQKHP GSDSCNFGGA AQLTSTDPSK GSCRFSASSG TVSTSPPSQP 240 SPPDFNSPPS TSTFPPPITT PTTGMPGSGP PFGVAEPTGL PRNLALVL* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-20 | 141 | 211 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-36 | 141 | 224 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG51737.1 | 0 | 2 | 222 | 18 | 228 | AC068667_16 beta-1,3 glucanase, putative; 26636-27432 [Arabidopsis thaliana] |
| GenBank | ABK94231.1 | 1e-37 | 6 | 226 | 57 | 231 | unknown [Populus trichocarpa] |
| EMBL | CBI30817.1 | 1e-37 | 138 | 243 | 31 | 138 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_174231.2 | 0 | 2 | 283 | 18 | 288 | unknown protein [Arabidopsis thaliana] |
| RefSeq | XP_002519744.1 | 7e-37 | 140 | 281 | 113 | 253 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 1e-17 | 138 | 225 | 9 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EG427499 | 84 | 141 | 224 | 0 |
| EV141197 | 70 | 141 | 210 | 5e-39 |
| EV141571 | 70 | 141 | 210 | 6e-39 |
| JG727672 | 80 | 140 | 219 | 7e-38 |
| EL386252 | 83 | 142 | 224 | 6e-37 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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