y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra010872 |
Family | GH28 |
Protein Properties | Length: 421 Molecular Weight: 43757.1 Isoelectric Point: 8.0575 |
Chromosome | Chromosome/Scaffold: 08 Start: 16878218 End: 16879777 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 77 | 396 | 0 |
QVCASPVPATLLVPKGDFLAGPVIFAGPCKSKVTVEVQGTIIAPPSGYPTPEWFLFEHVDNVVLTGPGTFHGKGEAVWKADGCGKKLNCNLPPTSLKFRN ILNLDISGISSVNAKAFHMFLVKTKNVNVQNIKITAPAESPNTDGIHLSNAVNVHIADSLIATGDDCISVGRGSTNVTVERVTCGPGHGLSVGSLGKYPN EENVAGIHFKNCIMKDTDNGLRIKSWGGSSPSTAVDITFEDITMTNVKNPIIIDQNYGSRGGDSKVAISNVLFKNVRGTTITKDEVQIMCSKSVPCKGVS VVDVELNFVGDKGGHPSASG |
Full Sequence |
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Protein Sequence Length: 421 Download |
MASARSLVAK ANNTNVGSLI LMTLVLGSCV ANGEDLDARR GLAAVAGNPT VFDITKNGAV 60 GNGATDSSKA FLNTWLQVCA SPVPATLLVP KGDFLAGPVI FAGPCKSKVT VEVQGTIIAP 120 PSGYPTPEWF LFEHVDNVVL TGPGTFHGKG EAVWKADGCG KKLNCNLPPT SLKFRNILNL 180 DISGISSVNA KAFHMFLVKT KNVNVQNIKI TAPAESPNTD GIHLSNAVNV HIADSLIATG 240 DDCISVGRGS TNVTVERVTC GPGHGLSVGS LGKYPNEENV AGIHFKNCIM KDTDNGLRIK 300 SWGGSSPSTA VDITFEDITM TNVKNPIIID QNYGSRGGDS KVAISNVLFK NVRGTTITKD 360 EVQIMCSKSV PCKGVSVVDV ELNFVGDKGG HPSASGGLVG ALCDNANVIF GGKLSFPLPK 420 * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 8.0e-82 | 51 | 406 | 365 | + polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-82 | 28 | 415 | 401 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-88 | 19 | 382 | 383 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-94 | 79 | 382 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-113 | 21 | 419 | 406 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABW24665.1 | 0 | 1 | 420 | 1 | 421 | pollen-specific polygalacturonase [Brassica rapa subsp. campestris] |
EMBL | CBI36886.1 | 0 | 1 | 417 | 1 | 412 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_171778.1 | 0 | 1 | 420 | 1 | 422 | PGA4 (POLYGALACTURONASE 4); polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002268540.1 | 0 | 1 | 417 | 1 | 408 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301489.1 | 0 | 14 | 417 | 2 | 410 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-18 | 140 | 356 | 113 | 337 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.000000000000002 | 137 | 376 | 70 | 325 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1rmg_A | 0.0000000000002 | 43 | 382 | 12 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.0000000000003 | 166 | 333 | 107 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000003 | 166 | 333 | 107 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |