| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra010873 |
| Family | GH28 |
| Protein Properties | Length: 422 Molecular Weight: 43889.2 Isoelectric Point: 8.2986 |
| Chromosome | Chromosome/Scaffold: 08 Start: 16882606 End: 16884171 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 77 | 393 | 0 |
| QVCASPVPATLLVPKGDFLAGPVIFAGPCKSKVTVEVQGTIIAPPSGYPTPEWFLFEHVDNVVLTGPGTFHGKGEAVWKADGCGKKLNCNLPPTSLKFRN ILNLDISGISSVNAKAFHMFLVKTTNVNVQNIKIIAPAESPNTDGIHLSNAVNVHIADSLIATGDDCISVGRGSTNVTVERVTCGPGHGLSVGSLGKYPN EENVAGIHFRNCTMKDTDNGLRIKSWGGSSPSTAVDITYEDIMMTNVKNPIIIDQNYGSRGGDSKVAISNVLFKNVRGTTITKDEVQFMCSKSVPCKGVS VVDVELNFVGDKGGHPS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 422 Download |
| MASARSLVAK ANNTNVGSLI LMALVLGSCV ANGEYLGGRR GLAAVAGNPT VFDITKNGAV 60 GNGATDSSKA FLNTWLQVCA SPVPATLLVP KGDFLAGPVI FAGPCKSKVT VEVQGTIIAP 120 PSGYPTPEWF LFEHVDNVVL TGPGTFHGKG EAVWKADGCG KKLNCNLPPT SLKFRNILNL 180 DISGISSVNA KAFHMFLVKT TNVNVQNIKI IAPAESPNTD GIHLSNAVNV HIADSLIATG 240 DDCISVGRGS TNVTVERVTC GPGHGLSVGS LGKYPNEENV AGIHFRNCTM KDTDNGLRIK 300 SWGGSSPSTA VDITYEDIMM TNVKNPIIID QNYGSRGGDS KVAISNVLFK NVRGTTITKD 360 EVQFMCSKSV PCKGVSVVDV ELNFVGDKGG HPSSSGGLVG ALCTNANVIF GGKLSFPLCP 420 K* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 4.0e-82 | 51 | 406 | 365 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-83 | 49 | 419 | 383 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-87 | 51 | 419 | 384 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-93 | 79 | 408 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-112 | 48 | 420 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABW24665.1 | 0 | 1 | 421 | 1 | 421 | pollen-specific polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CBI36886.1 | 0 | 1 | 419 | 1 | 414 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_171778.1 | 0 | 1 | 421 | 1 | 422 | PGA4 (POLYGALACTURONASE 4); polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002268540.1 | 0 | 1 | 419 | 1 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301489.1 | 0 | 14 | 419 | 2 | 412 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-19 | 140 | 356 | 113 | 337 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 2e-16 | 137 | 376 | 70 | 325 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ib4_B | 0.000000000000009 | 145 | 405 | 83 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ib4_A | 0.000000000000009 | 145 | 405 | 83 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ia5_A | 0.000000000000009 | 145 | 405 | 83 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
