| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra010979 |
| Family | CE11 |
| Protein Properties | Length: 324 Molecular Weight: 34939.8 Isoelectric Point: 6.3096 |
| Chromosome | Chromosome/Scaffold: 08 Start: 17387692 End: 17389579 |
| Description | UDP-3-O-acyl N-acetylglycosamine deacetylase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE11 | 40 | 315 | 0 |
| QQTLAASVEVNGKALHSGKLSTVKLLPAIAGAGRYFEFRSRSIPASIEFAQESPLCTTLLKDGLRIRTVEHLLSALEAKGVDNCRIQIESESPDDREVEV PICDGSAKEWVDAIEEAGINVAQNHGGENVEKMVAHVNKPVYVCKNDSFVAVFPDLETRITCGIDFPQVPAIGCQWFSWKPEHDSSFAKDIAPSRTFCVY EEVERMREAGLIKGGSLDNAIVCSAEHGWMNPPLRFDNEACRHKILDLIGDLSLVAQGGNGGFPVAHVVAFKASAT | |||
| Full Sequence |
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| Protein Sequence Length: 324 Download |
| MSLSAAVKAK NSTLISLMRL SSFSSATSST VSLKPSGRLQ QTLAASVEVN GKALHSGKLS 60 TVKLLPAIAG AGRYFEFRSR SIPASIEFAQ ESPLCTTLLK DGLRIRTVEH LLSALEAKGV 120 DNCRIQIESE SPDDREVEVP ICDGSAKEWV DAIEEAGINV AQNHGGENVE KMVAHVNKPV 180 YVCKNDSFVA VFPDLETRIT CGIDFPQVPA IGCQWFSWKP EHDSSFAKDI APSRTFCVYE 240 EVERMREAGL IKGGSLDNAI VCSAEHGWMN PPLRFDNEAC RHKILDLIGD LSLVAQGGNG 300 GFPVAHVVAF KASATFRLSS SFL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK13188 | PRK13188 | 5.0e-68 | 40 | 311 | 305 | + bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed | ||
| TIGR00325 | lpxC | 1.0e-74 | 40 | 313 | 280 | + UDP-3-0-acyl N-acetylglucosamine deacetylase. UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli , LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| pfam03331 | LpxC | 2.0e-86 | 40 | 313 | 280 | + UDP-3-O-acyl N-acetylglycosamine deacetylase. The enzymes in this family catalyze the second step in the biosynthetic pathway for lipid A. | ||
| COG0774 | LpxC | 5.0e-91 | 38 | 313 | 284 | + UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane] | ||
| PRK13186 | lpxC | 3.0e-105 | 40 | 313 | 279 | + UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008759 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity |
| GO:0009245 | lipid A biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG03128.1 | 0 | 1 | 311 | 239 | 542 | AC004133_22 F5A9.8 [Arabidopsis thaliana] |
| GenBank | AAG03130.1 | 0 | 1 | 311 | 239 | 548 | AC004133_24 F5A9.4 [Arabidopsis thaliana] |
| DDBJ | BAD94001.1 | 0 | 1 | 312 | 1 | 311 | hypothetical protein [Arabidopsis thaliana] |
| RefSeq | NP_173874.2 | 0 | 1 | 312 | 1 | 311 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Arabidopsis thaliana] |
| RefSeq | NP_173884.5 | 0 | 1 | 312 | 44 | 354 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3uhm_A | 7e-32 | 40 | 306 | 4 | 264 | A Chain A, Crystal Structure Of Degv, A Fatty Acid Binding Protein From Bacillus Subtilis |
| PDB | 3u1y_B | 7e-32 | 40 | 306 | 4 | 264 | A Chain A, Crystal Structure Of Degv, A Fatty Acid Binding Protein From Bacillus Subtilis |
| PDB | 3u1y_A | 7e-32 | 40 | 306 | 4 | 264 | A Chain A, Crystal Structure Of Degv, A Fatty Acid Binding Protein From Bacillus Subtilis |
| PDB | 3p3e_A | 7e-32 | 40 | 306 | 4 | 264 | A Chain A, Crystal Structure Of Degv, A Fatty Acid Binding Protein From Bacillus Subtilis |
| PDB | 2ves_C | 7e-32 | 40 | 306 | 4 | 264 | A Chain A, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa Complexed With The Potent Bb-78485 Inhibitor |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lipid IVA biosynthesis | UDPACYLGLCNACDEACETYL-RXN | EC-3.5.1.108 | UDP-3-O-acyl-N-acetylglucosamine deacetylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FY448967 | 205 | 37 | 241 | 0 |
| CK277774 | 263 | 37 | 299 | 0 |
| BX837978 | 156 | 146 | 301 | 0 |
| BX837978 | 103 | 37 | 139 | 0 |
| GT006630 | 264 | 37 | 299 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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