| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra011100 |
| Family | CBM43 |
| Protein Properties | Length: 503 Molecular Weight: 54036.2 Isoelectric Point: 5.1079 |
| Chromosome | Chromosome/Scaffold: 01 Start: 3876928 End: 3878906 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 357 | 439 | 1.5e-30 |
| WCVASSQASVTELQTALDWACGPGSVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGANSSDCSFGGVSVEVDKDPSYGNC | |||
| GH17 | 28 | 316 | 0 |
| IGICYGRNADNLPTPNKVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLHNNILPYYPTTKITSISVGLEVTEAPD NATGLLLPAMRNIHTALKKSGLDKKIKISSSHSLAVLSRSFPPSSATFSKKHLPFLKPMLEFLVENESPFMIDLYPYYAYRDSSEKLDAIYFALTAMNFK TVKVMVTESGWPSRGSPKETAATPDNALAYNTNLIRHVVGDPGTPAKPGEEIDVYLFSLFNENRKPGIESERNWGMFYANGTSVYALDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 503 Download |
| MSERLKLILW ICLSILAFLD FGGAASKIGI CYGRNADNLP TPNKVSELIQ HLNIKFVRIY 60 DANIDVLKAF ANTGIELMIG VPNADLLAFA QFQSNVDTWL HNNILPYYPT TKITSISVGL 120 EVTEAPDNAT GLLLPAMRNI HTALKKSGLD KKIKISSSHS LAVLSRSFPP SSATFSKKHL 180 PFLKPMLEFL VENESPFMID LYPYYAYRDS SEKLDAIYFA LTAMNFKTVK VMVTESGWPS 240 RGSPKETAAT PDNALAYNTN LIRHVVGDPG TPAKPGEEID VYLFSLFNEN RKPGIESERN 300 WGMFYANGTS VYALDFTGES SVPVSPSNSS TTSPGPSSSP GNSTVIIGGG GGGARKWCVA 360 SSQASVTELQ TALDWACGPG SVDCSAVQPD QPCFEPDTVL SHASYAFNTY YQQSGANSSD 420 CSFGGVSVEV DKDPSYGNCL YMIAPSTDGM NRTMAGNITG NITAIDSPMA SPSSSSDGYR 480 QMVVSVAVSV LLPLFVVSLS LW* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 1.0e-7 | 57 | 307 | 265 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-20 | 356 | 426 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 5.0e-39 | 356 | 441 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 6.0e-91 | 28 | 316 | 317 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB79694.1 | 0 | 25 | 502 | 2 | 512 | beta-1, 3-glucanase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_567828.3 | 0 | 1 | 435 | 1 | 469 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_849556.1 | 0 | 1 | 502 | 1 | 534 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002283473.1 | 0 | 26 | 457 | 24 | 461 | PREDICTED: similar to beta-1,3-glucanase [Vitis vinifera] |
| RefSeq | XP_002514201.1 | 0 | 1 | 460 | 1 | 466 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 28 | 316 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 28 | 317 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0 | 28 | 317 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur7_B | 0 | 28 | 317 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 28 | 317 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
