| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra011249 |
| Family | CBM43 |
| Protein Properties | Length: 484 Molecular Weight: 52548 Isoelectric Point: 6.51 |
| Chromosome | Chromosome/Scaffold: 01 Start: 3085659 End: 3087644 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 365 | 447 | 3.1e-25 |
| WCVLAASANLQDPQLGPSVSYACDHADCTSLGYGSSCGSLNLAQNVSYAFNSYYQVSDQLDSACKFPGLSVITTNDPSVGSCK | |||
| GH17 | 27 | 345 | 0 |
| IGVNWGSQASHPLPPATVVRLLRENGIQKVKLFEADSQILRALSRSGIQVMVGIPNDLLAPIAGSVAVAERWVSQNVSAHVSSNGVDIRYVAVGNEPFLK SFNGTFESITLPALQNIQSALIKAGLASQVKVTVPLNADVYESASNLPSAGDFRAEIRDLMISIVKFLSDNQAPFTINIYPFISLYNDPHFPVEFAFFDG TGSPINDNGRIYDNVLDANYDTLVWSLQKNGFGNMSIIVGEVGWPTDGDKNANMQYARRYNQGFMNRQKAGRGTPMRPGPMDAYLFSLIDEDAKSIQPGN FERHWGIFYIDGQPKYQLS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 484 Download |
| MLSKSVVAVF FLIILLYGNL FIEVEGIGVN WGSQASHPLP PATVVRLLRE NGIQKVKLFE 60 ADSQILRALS RSGIQVMVGI PNDLLAPIAG SVAVAERWVS QNVSAHVSSN GVDIRYVAVG 120 NEPFLKSFNG TFESITLPAL QNIQSALIKA GLASQVKVTV PLNADVYESA SNLPSAGDFR 180 AEIRDLMISI VKFLSDNQAP FTINIYPFIS LYNDPHFPVE FAFFDGTGSP INDNGRIYDN 240 VLDANYDTLV WSLQKNGFGN MSIIVGEVGW PTDGDKNANM QYARRYNQGF MNRQKAGRGT 300 PMRPGPMDAY LFSLIDEDAK SIQPGNFERH WGIFYIDGQP KYQLSLGNGN GLVPAKGVRH 360 MAKKWCVLAA SANLQDPQLG PSVSYACDHA DCTSLGYGSS CGSLNLAQNV SYAFNSYYQV 420 SDQLDSACKF PGLSVITTND PSVGSCKFKI MIKSDSSGGE ASAPFKRSVA VLLLLWMCVY 480 IVL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0006 | 259 | 337 | 80 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-14 | 364 | 433 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-29 | 364 | 448 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-76 | 27 | 345 | 321 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_194843.1 | 0 | 1 | 483 | 1 | 484 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002324127.1 | 0 | 23 | 468 | 37 | 488 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330836.1 | 0 | 20 | 475 | 31 | 491 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528007.1 | 0 | 22 | 457 | 24 | 461 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| RefSeq | XP_002530371.1 | 0 | 24 | 479 | 20 | 481 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 27 | 346 | 1 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 1aq0_B | 0 | 27 | 346 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 27 | 346 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 2cyg_A | 0 | 27 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 27 | 346 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
