| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra011284 |
| Family | GT2 |
| Protein Properties | Length: 972 Molecular Weight: 109921 Isoelectric Point: 8.367 |
| Chromosome | Chromosome/Scaffold: 01 Start: 2923939 End: 2930679 |
| Description | Cellulose-synthase-like C5 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT2 | 510 | 686 | 1.1e-29 |
| VQIPMCNEREVYEQSISAVCQLDWTKDRILVQVLDDSNDESIQQLIKAEVAKWSQKGVNIIYRHRLVRTGYKAGNLKSAMSCDYVEAYEFVAIFDADFQP NPDFLKLTVPHFKDNPELGLVQARWTFVNKDENLLTRLQNINLCFHFEVEQQVSGVFLNFFGFNGTAGVWRIKALEE | |||
| Full Sequence |
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| Protein Sequence Length: 972 Download |
| MAMVFIDKAV IIQYPHSMTL LTLQLLLCLF TVADEWDTLD PEESIYPLLK SFLPVSIFYN 60 ANVAFALASL KGVNIPMYIA IKRLTPLAVL IAGYLFGKGK PTTQVLLTAA GCVVAALGDF 120 SFDLLGYGLA LTRGVPTMFP SLGSLASVLL TICYNKDFFT PRCLQTMYLV LVEKSGAQDG 180 VSSIEIMFYN SFLSLPFLSF LIIATSEFPN SISLLLAKCS YLPFLVILVL SLVMRIVLNF 240 TMFLCTIVNS AITTTIVGVL KGVGSTTLGF VLLGGVEVHM APRLDFSDWW AKDTRKGTPV 300 VVKMENPNYS VVEIQGPDSA FRPVEKSRGK NAKQVTWVLL LKAHRAVGCL TWFATVFWSL 360 LGAIKKRLSF THPLGSERLG RDRWLFTAIK LFLALSLLIL GFEIIAYFRG WHYFESPSLH 420 IPTSTLEIQS LLHLVYVGWL WLRADYIAPP IKALSKFCIV LFLIQSVDRL ILCLGCFWIK 480 YKKIKPRFDE EPFRNDDAEG CGYVYPMVLV QIPMCNEREV YEQSISAVCQ LDWTKDRILV 540 QVLDDSNDES IQQLIKAEVA KWSQKGVNII YRHRLVRTGY KAGNLKSAMS CDYVEAYEFV 600 AIFDADFQPN PDFLKLTVPH FKDNPELGLV QARWTFVNKD ENLLTRLQNI NLCFHFEVEQ 660 QVSGVFLNFF GFNGTAGVWR IKALEESGGW LERTTVEDMD IAVRAHLHGW KFIYLNDVKV 720 LCEVPESYEA YKKQQHRWHS GPMQLFRLCL GAILTSKIAI WKKANLILLF FLLRKLILPF 780 YSFTLFCIIL PLTMFVPEAE LPVWVICYIP VFMSFLNLLP SPKSFPFIVP YLLFENTMSV 840 TKFNAMVSGL FQLGSSYEWI VTKKAGRSSE SDLLSITEKE TPSKRSQLLR GVSDSELLEL 900 NQLEEQKQAV AKKPVKKINK IYHKELALAF LLLTAAVRSL LAAQGVHFYF LMFQGVTFLL 960 VGLDLIGEQM S* 1020 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd06423 | CESA_like | 2.0e-32 | 510 | 698 | 190 | + CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan. | ||
| cd06435 | CESA_NdvC_like | 4.0e-35 | 510 | 747 | 239 | + NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response. | ||
| COG1215 | COG1215 | 1.0e-35 | 505 | 816 | 314 | + Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | ||
| cd06421 | CESA_CelA_like | 1.0e-54 | 506 | 746 | 244 | + CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end. | ||
| cd06437 | CESA_CaSu_A2 | 1.0e-111 | 506 | 742 | 239 | + Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants were significantly smaller, while the single mutant plants were almost normal. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF01495.1 | 0 | 280 | 971 | 1 | 690 | putative glucosyltransferase [Arabidopsis thaliana] |
| RefSeq | NP_180039.1 | 0 | 280 | 971 | 1 | 690 | ATCSLC08; cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | NP_194887.1 | 0 | 280 | 971 | 1 | 692 | ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5); cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002324379.1 | 0 | 280 | 971 | 1 | 692 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515366.1 | 0 | 280 | 971 | 1 | 693 | transferase, transferring glycosyl groups, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4hg6_A | 4e-24 | 426 | 786 | 70 | 441 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
