| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra011341 |
| Family | GH28 |
| Protein Properties | Length: 394 Molecular Weight: 43188 Isoelectric Point: 8.5291 |
| Chromosome | Chromosome/Scaffold: 01 Start: 2653473 End: 2655675 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 51 | 378 | 0 |
| EGTGGSSLVINENEKYTIQPQLFEGPCVSSYIHIQIDGKIEAPKRPKQWGNKRTESWLMFKNVESLFINGSGVLDPHGENWWRSVRHSKRPRTLSFKQCT DIIYNGLTQYNSPKNHISVYGCTNATLSNLTLLAPEKSPNTDGIGISLSHNIRILDSSIQTGDDCIAITGGRGGSSDINITRVACGPGHGISIGSLGKGD IDDTVENVIVRSCSFWGTQNGARIKTWHGGKGLAKNILFENITVTNTKYPIIIDQHYSNGGTGHVKGNAVKVSDVTFRYIEGTSASKIAIKLDCDENQGC HNIVMEHIKLTSAKPGKKLSAYCKFADV | |||
| Full Sequence |
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| Protein Sequence Length: 394 Download |
| MIILVSCHLE YGDGRRILRI KDFITDTNHK NVDYSQVFQK AWKGLCEGEG EGTGGSSLVI 60 NENEKYTIQP QLFEGPCVSS YIHIQIDGKI EAPKRPKQWG NKRTESWLMF KNVESLFING 120 SGVLDPHGEN WWRSVRHSKR PRTLSFKQCT DIIYNGLTQY NSPKNHISVY GCTNATLSNL 180 TLLAPEKSPN TDGIGISLSH NIRILDSSIQ TGDDCIAITG GRGGSSDINI TRVACGPGHG 240 ISIGSLGKGD IDDTVENVIV RSCSFWGTQN GARIKTWHGG KGLAKNILFE NITVTNTKYP 300 IIIDQHYSNG GTGHVKGNAV KVSDVTFRYI EGTSASKIAI KLDCDENQGC HNIVMEHIKL 360 TSAKPGKKLS AYCKFADVKA SFVNIHINCG LYP* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-68 | 33 | 379 | 356 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-74 | 66 | 381 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 4.0e-80 | 33 | 366 | 337 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 2.0e-80 | 15 | 373 | 367 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 5.0e-93 | 33 | 389 | 358 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_194963.2 | 0 | 1 | 314 | 17 | 329 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_194964.2 | 0 | 99 | 392 | 5 | 298 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 0 | 33 | 389 | 38 | 387 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_680757.1 | 0 | 36 | 392 | 4 | 360 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 1 | 389 | 10 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-23 | 123 | 333 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-23 | 123 | 333 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-23 | 123 | 333 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-23 | 123 | 333 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-23 | 123 | 333 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CV536748 | 261 | 88 | 344 | 0 |
| DR050772 | 292 | 85 | 360 | 0 |
| CV538127 | 228 | 57 | 280 | 0 |
| EY474520 | 236 | 139 | 374 | 0 |
| GT141262 | 218 | 157 | 374 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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