| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra011428 |
| Family | CE8 |
| Protein Properties | Length: 506 Molecular Weight: 55965.7 Isoelectric Point: 4.6624 |
| Chromosome | Chromosome/Scaffold: 01 Start: 2210335 End: 2213626 |
| Description | pectin methylesterase 44 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 192 | 488 | 0 |
| DVIVAQDGTGNFTTIMDAVKEAPDYSGTRFVIYIKKGLYLENVEIKKKKWNLVMLGDGIDVTIISGNRSYIDGSTTFRSATFAVNGRGFLARDITFQNTA GPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECTITGTVDFIFGDGTVVFQNCQILVKKGLPDQKNTITAQGRKEADQPSGFSIQFSNIS ADADLVPYLNTTHTYLGRPWKQYSRTVFMRNNLSDVVRPEGWLEWNTTFALDTLFYGEFLNYGPGSGLSSRVKWPGYHVFNNSDQANNFTVSQFIEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 506 Download |
| MQMQYDYLKV PASEFVGSID TIVEVISQVT SILSEFADFS GDSRLQDAVS DCLDLLDVSS 60 DELSWSAYAS QNPNGKGNGT GNVGSDTKTW LSAALSNQDT CMEGFDGTSG LIKPLVAGSL 120 GQLYSMLRDL LPLVEPDQKP QPITKPRPIG KGPTAPPGRT LRNIDDDEES QFPDWFRPDD 180 RRLLETNGVS YDVIVAQDGT GNFTTIMDAV KEAPDYSGTR FVIYIKKGLY LENVEIKKKK 240 WNLVMLGDGI DVTIISGNRS YIDGSTTFRS ATFAVNGRGF LARDITFQNT AGPEKHQAVA 300 LRSDSDLSVF YRCAMRGYQD TLYTHTMRQF YRECTITGTV DFIFGDGTVV FQNCQILVKK 360 GLPDQKNTIT AQGRKEADQP SGFSIQFSNI SADADLVPYL NTTHTYLGRP WKQYSRTVFM 420 RNNLSDVVRP EGWLEWNTTF ALDTLFYGEF LNYGPGSGLS SRVKWPGYHV FNNSDQANNF 480 TVSQFIEGNL WLPSTGVTFT AGLGV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02301 | PLN02301 | 1.0e-164 | 77 | 503 | 435 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 2.0e-168 | 77 | 505 | 437 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02506 | PLN02506 | 1.0e-177 | 33 | 504 | 474 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 0 | 3 | 505 | 503 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 192 | 489 | 298 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABM06040.1 | 0 | 102 | 503 | 1 | 402 | At4g33220 [Arabidopsis thaliana] |
| EMBL | CAB36796.1 | 0 | 36 | 503 | 8 | 475 | pectinesterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_189913.3 | 0 | 3 | 503 | 35 | 525 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567917.4 | 0 | 3 | 503 | 23 | 523 | enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
| Swiss-Prot | Q43062 | 0 | 3 | 505 | 44 | 522 | PME_PRUPE RecName: Full=Pectinesterase/pectinesterase inhibitor PPE8B; Includes: RecName: Full=Pectinesterase inhibitor PPE8B; AltName: Full=Pectin methylesterase inhibitor PPE8B; Includes: RecName: Full=Pectinesterase PPE8B; Short=PE PPE8B; AltName: Full=Pectin methylesterase PPE8B; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 192 | 503 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 185 | 503 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3uw0_A | 3e-21 | 187 | 448 | 27 | 302 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1qjv_B | 3e-21 | 188 | 460 | 1 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 3e-21 | 188 | 460 | 1 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FG572132 | 253 | 99 | 351 | 0 |
| DK549961 | 227 | 280 | 506 | 0 |
| DY290214 | 363 | 105 | 467 | 0 |
| FD971944 | 223 | 284 | 506 | 0 |
| EV567954 | 243 | 214 | 456 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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