| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra011440 |
| Family | GH28 |
| Protein Properties | Length: 475 Molecular Weight: 51899.1 Isoelectric Point: 6.7828 |
| Chromosome | Chromosome/Scaffold: 01 Start: 2158379 End: 2161250 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 105 | 450 | 0 |
| EGGAQLNVPKGTWLSGSFNLTSNFTLFLEQGAVILGSQDPEEWPIIEPLPSYGRGRERPGGRHISLIHGDNLTNVVITGENGTIDGQGKMWWELWWNRTL VHTRGHLIEIKNSHNILISNLTLLNSPFWTVHPVYCSNVVIRDMTILAPMNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGMAMARPSSNI IIRRISGTTRTCSGVGIGSEMSGGIFNITVQDIHVWDSAAGLRIKTDVGRGGYISNITISNVLLEKVKVPIRFSRGSNDHPDDKWDPKAMPRVNGIYISN VVSVDSRKAPMLLGVEGGTFQDICLRNVTLLGLPESEKWKCKDVSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 475 Download |
| MESEKTSVVS SITRPSWVLL LLAFTVLAIL SHQISSNSFL PLFISTTTTT RIHDPVTCSG 60 FFTHDPSPKR IVMSITEFGG VGDGKTSNTE AFRRAVRHLR GFAGEGGAQL NVPKGTWLSG 120 SFNLTSNFTL FLEQGAVILG SQDPEEWPII EPLPSYGRGR ERPGGRHISL IHGDNLTNVV 180 ITGENGTIDG QGKMWWELWW NRTLVHTRGH LIEIKNSHNI LISNLTLLNS PFWTVHPVYC 240 SNVVIRDMTI LAPMNAPNTD GIDPDSSTNV CIEDCYIESG DDLVAVKSGW DQYGMAMARP 300 SSNIIIRRIS GTTRTCSGVG IGSEMSGGIF NITVQDIHVW DSAAGLRIKT DVGRGGYISN 360 ITISNVLLEK VKVPIRFSRG SNDHPDDKWD PKAMPRVNGI YISNVVSVDS RKAPMLLGVE 420 GGTFQDICLR NVTLLGLPES EKWKCKDVSG YASDVFPLSC PQLLQKEGSV SQCL* 480 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03010 | PLN03010 | 5.0e-16 | 74 | 454 | 403 | + polygalacturonase |
| PLN02218 | PLN02218 | 9.0e-17 | 73 | 375 | 322 | + polygalacturonase ADPG |
| PLN03003 | PLN03003 | 5.0e-23 | 73 | 388 | 324 | + Probable polygalacturonase At3g15720 |
| pfam00295 | Glyco_hydro_28 | 9.0e-27 | 171 | 448 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| COG5434 | PGU1 | 6.0e-52 | 72 | 440 | 392 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN76963.1 | 0 | 57 | 470 | 51 | 463 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI37530.1 | 0 | 57 | 474 | 62 | 477 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_195070.2 | 0 | 1 | 473 | 1 | 472 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002274138.1 | 0 | 1 | 474 | 1 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310517.1 | 0 | 43 | 473 | 5 | 434 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5.60519e-45 | 68 | 436 | 24 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5.60519e-45 | 68 | 436 | 24 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5.60519e-45 | 68 | 436 | 24 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5.60519e-45 | 68 | 436 | 24 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-26 | 117 | 449 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
