| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra011537 |
| Family | CBM43 |
| Protein Properties | Length: 507 Molecular Weight: 53209.3 Isoelectric Point: 5.6442 |
| Chromosome | Chromosome/Scaffold: 01 Start: 1781606 End: 1785729 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 369 | 450 | 1.4e-33 |
| WCVPRNGATDEQLQASLDWACGQGIDCGPIQPGGACFEPNNVASHAAFAMNMYFQKSPKKPTDCDFSQTATITSQNPSYNSC | |||
| GH17 | 26 | 342 | 0 |
| IGVNIGQVADNLPPPSETVKLLKSSSIEKVRLYGADPAIIKALAGTGIGIVIGAGNGDIPSLAADPNAASQWINSNVLPFYPASKIILINIGNEVLMSND PNLVNQLLPAMQNVQKALEAASLGGKIKVSTVHSMTVLGSSDPPSSGSFAPGSQAGLKGILQFLSDTGSPFTINPYPFFAYRGDTRPETLAFCLFQPNPG RVDGNTGIKYMNMFDAQVDAVHSALKSVGFEKVEIVVAETGWPSRGDPNEVGPSVDNAKAYNGNLIAHLKSMVGTPLMPGKSVDTYIFALYDENLKPGPS SERAFGLFKTDLSMAYD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 507 Download |
| MAISIYFSLL LIFLSHFPSS HAEPFIGVNI GQVADNLPPP SETVKLLKSS SIEKVRLYGA 60 DPAIIKALAG TGIGIVIGAG NGDIPSLAAD PNAASQWINS NVLPFYPASK IILINIGNEV 120 LMSNDPNLVN QLLPAMQNVQ KALEAASLGG KIKVSTVHSM TVLGSSDPPS SGSFAPGSQA 180 GLKGILQFLS DTGSPFTINP YPFFAYRGDT RPETLAFCLF QPNPGRVDGN TGIKYMNMFD 240 AQVDAVHSAL KSVGFEKVEI VVAETGWPSR GDPNEVGPSV DNAKAYNGNL IAHLKSMVGT 300 PLMPGKSVDT YIFALYDENL KPGPSSERAF GLFKTDLSMA YDAGLAKSSG SSSNSSGQTP 360 SGKVTSTGWC VPRNGATDEQ LQASLDWACG QGIDCGPIQP GGACFEPNNV ASHAAFAMNM 420 YFQKSPKKPT DCDFSQTATI TSQNPSYNSC VYPGGGGGAG STGVMNKYVS SDKLDSKDNG 480 AVEPKVYSSL SFLLIFVVSL IFHVNM* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 3.0e-7 | 46 | 336 | 298 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 1.0e-22 | 369 | 439 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-41 | 369 | 452 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-95 | 26 | 342 | 317 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD22313.1 | 0 | 20 | 446 | 19 | 443 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
| GenBank | ABK95331.1 | 0 | 1 | 455 | 1 | 454 | unknown [Populus trichocarpa] |
| RefSeq | NP_179219.4 | 0 | 20 | 502 | 19 | 493 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195174.6 | 0 | 1 | 486 | 1 | 485 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002509479.1 | 0 | 17 | 455 | 19 | 458 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 26 | 333 | 1 | 300 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 26 | 333 | 2 | 303 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 26 | 333 | 2 | 303 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_B | 0 | 26 | 333 | 2 | 303 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_A | 0 | 26 | 333 | 2 | 303 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
