| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra011721 |
| Family | AA1 |
| Protein Properties | Length: 1187 Molecular Weight: 133852 Isoelectric Point: 8.1936 |
| Chromosome | Chromosome/Scaffold: 01 Start: 875241 End: 881972 |
| Description | Pentatricopeptide repeat (PPR) superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 708 | 1146 | 0 |
| PQQVILINGQFPGPAIEAVTNNNIVVNLINKLDEPFLITWNGVKQRRTSWQDGVLGTNCPIQPNSNWTYQFQLKDQIGTYTYFASTSMHRASGAFGALNI NQRSVITTPYPTPDGDFTLLVTDWFKMSHKDLRKRLDAGYALPLSDGLLINGVSKGLIFTGEQGKTYKFRVSNVGIATSINFRIQDHTMSLIEVEGAHTL QETYESLDVHVGQSVTVLVNLKASVRDYYIVASTRFTKPILNTNASLRYLGSKNAVSGPLPVGPTYHIHWSMKQARTIRMNLTANAARPNPQGSFHYGTI PINRTLILANAATMIYGKLRYTVNRISYINPETPLKLADCTPTIGPAHFGTSVFDVELHEFVEIIFQNDERSIQSWHMDGTSAFLVGYGSGTWNVTMRKR YNLVDAVARHTFQVYPLSWTSILVSLDNKGMWNLRSQIW | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1187 Download |
| MNQTIARKLS TFVNMSSSYA SMKRFPEKKF FNSNQEDVSV VERLCKGKRF SEAIDVLCEQ 60 KLLIEAVQLL SRAKKPPPAS TYCNLIQICT QRRALEEGKK VHEHIIASGF VPGVVICNRL 120 MGMYAKCGSL VDARKVFDEM PHRDVCSWNV MVNGYAEAGL VEEARKVFDE MPERDSYSWT 180 AMVNGYVKRD QPEEALVMYS LMQKERNSKA NIFTVSSAVA AAAEIACIRR GREIHGHVVR 240 AGLDSDEVLW SSLMDMCGKC GCIDEARRIF DKIVVKDVVS WTSMIDRYLK SRRWREGFSL 300 FSELVGSRTR PNEYTFAGVL NACTDLTTEE FGKQVHGYMT RVGYDPYSFA SSSLVDMYTK 360 CGNMESAKRV VDGCPRPDLF SWTSLIGGYA QNGEPEKALK YFDLLLESGT KPDHITFVSV 420 LSACTHAGLL EKGLEYFHSI TEKHGMSHTD DHYTCLVDLL ARSGRFEELK DVISQMPMKP 480 SKYLWASVLG GCSTHGNVDL AEEAARELFE IEPENPATYV TMANIYASAG KWEEEGRMRK 540 RLNQTGITKT PGSSWTEVKR MRHVFIAGDT SHPMHEQIVE YLSELRKKMK EEGYVPATNL 600 VLHDVEDEQK EENLVYHSEK LAVAFAILST PEGTGVKVFK NLRACVDCHS AIKFISKITK 660 RKITVRDSAR FHCFENGQCS CRDYCAEDPY LFYTWTVTYG TRSPLGVPQQ VILINGQFPG 720 PAIEAVTNNN IVVNLINKLD EPFLITWNGV KQRRTSWQDG VLGTNCPIQP NSNWTYQFQL 780 KDQIGTYTYF ASTSMHRASG AFGALNINQR SVITTPYPTP DGDFTLLVTD WFKMSHKDLR 840 KRLDAGYALP LSDGLLINGV SKGLIFTGEQ GKTYKFRVSN VGIATSINFR IQDHTMSLIE 900 VEGAHTLQET YESLDVHVGQ SVTVLVNLKA SVRDYYIVAS TRFTKPILNT NASLRYLGSK 960 NAVSGPLPVG PTYHIHWSMK QARTIRMNLT ANAARPNPQG SFHYGTIPIN RTLILANAAT 1020 MIYGKLRYTV NRISYINPET PLKLADCTPT IGPAHFGTSV FDVELHEFVE IIFQNDERSI 1080 QSWHMDGTSA FLVGYGSGTW NVTMRKRYNL VDAVARHTFQ VYPLSWTSIL VSLDNKGMWN 1140 LRSQIWSRRY LGQELYVRVW NDEKSIYTEA DPPLNALYCG QAKRPR* 1200 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02792 | PLN02792 | 7.0e-179 | 686 | 1182 | 515 | + oxidoreductase | ||
| PLN02835 | PLN02835 | 0 | 686 | 1182 | 511 | + oxidoreductase | ||
| PLN02354 | PLN02354 | 0 | 686 | 1183 | 521 | + copper ion binding / oxidoreductase | ||
| PLN02991 | PLN02991 | 0 | 686 | 1182 | 511 | + oxidoreductase | ||
| PLN02168 | PLN02168 | 0 | 689 | 1181 | 519 | + copper ion binding / pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_195433.1 | 0 | 686 | 1185 | 26 | 540 | sks15 (SKU5 Similar 15); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_195434.1 | 0 | 1 | 684 | 1 | 690 | pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_565554.1 | 0 | 686 | 1186 | 25 | 539 | sks16 (SKU5 Similar 16); copper ion binding / pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002310164.1 | 0 | 686 | 1185 | 24 | 537 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002324099.1 | 0 | 12 | 684 | 5 | 675 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 693 | 1184 | 6 | 543 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
| PDB | 1asq_A | 0 | 693 | 1184 | 6 | 543 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
| PDB | 1asp_B | 0 | 693 | 1184 | 6 | 543 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
| PDB | 1asp_A | 0 | 693 | 1184 | 6 | 543 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
| PDB | 1aso_B | 0 | 693 | 1184 | 6 | 543 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| aerobic respiration (cytochrome c) | CYTOCHROME-C-OXIDASE-RXN | EC-1.9.3.1 | cytochrome-c oxidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO801725 | 435 | 764 | 1182 | 0 |
| ES902179 | 227 | 973 | 1185 | 0 |
| HO796073 | 504 | 711 | 1180 | 0 |
| ES904896 | 277 | 654 | 930 | 0 |
| EV544218 | 227 | 973 | 1185 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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