| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra011881 |
| Family | GH9 |
| Protein Properties | Length: 476 Molecular Weight: 52449.4 Isoelectric Point: 4.7062 |
| Chromosome | Chromosome/Scaffold: 01 Start: 93465 End: 96379 |
| Description | glycosyl hydrolase 9B18 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH9 | 7 | 466 | 0 |
| DYSDALSKSILFFEGQRSGYLPNDQRLTWRRNSGLSDGWTHSTDLTGGYYDAGDNVKFNFPMAFTTTMLAWSVIEFGELMPPPELRNALVALRWSSDYLL KSVSQLPNRIFVQVGDPIADHNCWERPEDMDTPRTAYVVNAPNPASEVAGEITAALSAASIAVRSSDPGYSQTLLQNAVKTFQFADMHRGAYSSNDDIKN DVCPFYCDFNGFQDELLWGAAWLRKATGDESYLSYIESNREPFGASENVDEFGWDNKIGGLNVLVSKEVITGNMYNLEAYKASAESFMCSLVPESPGQHV EYTPGGLLYKPGGSQLQHATTISFLLLVYAQYLSRSSLSLNCGSLSVPPDHLRRLAKKQVDYILGENPMGLSYMVGYGERYPKRIHHRGSSLPSIVDHPG TVGCKDGSVYFNSTEPNPNVLIGAVVGGPGEDDKYDDDRSDFRKSEPTTYINAPFVGVLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 476 Download |
| MSSNQHDYSD ALSKSILFFE GQRSGYLPND QRLTWRRNSG LSDGWTHSTD LTGGYYDAGD 60 NVKFNFPMAF TTTMLAWSVI EFGELMPPPE LRNALVALRW SSDYLLKSVS QLPNRIFVQV 120 GDPIADHNCW ERPEDMDTPR TAYVVNAPNP ASEVAGEITA ALSAASIAVR SSDPGYSQTL 180 LQNAVKTFQF ADMHRGAYSS NDDIKNDVCP FYCDFNGFQD ELLWGAAWLR KATGDESYLS 240 YIESNREPFG ASENVDEFGW DNKIGGLNVL VSKEVITGNM YNLEAYKASA ESFMCSLVPE 300 SPGQHVEYTP GGLLYKPGGS QLQHATTISF LLLVYAQYLS RSSLSLNCGS LSVPPDHLRR 360 LAKKQVDYIL GENPMGLSYM VGYGERYPKR IHHRGSSLPS IVDHPGTVGC KDGSVYFNST 420 EPNPNVLIGA VVGGPGEDDK YDDDRSDFRK SEPTTYINAP FVGVLAYFAA NPSFS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03009 | PLN03009 | 0 | 1 | 475 | 475 | + cellulase | ||
| PLN02308 | PLN02308 | 0 | 3 | 473 | 471 | + endoglucanase | ||
| PLN02266 | PLN02266 | 0 | 6 | 469 | 464 | + endoglucanase | ||
| pfam00759 | Glyco_hydro_9 | 0 | 7 | 466 | 466 | + Glycosyl hydrolase family 9. | ||
| PLN02613 | PLN02613 | 0 | 7 | 466 | 463 | + endoglucanase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACT54548.1 | 0 | 3 | 472 | 25 | 493 | endo-1,4-beta-glucanase [Dimocarpus longan] |
| EMBL | CAB38821.1 | 0 | 1 | 472 | 1 | 472 | putative endo-1, 4-beta-glucanase [Arabidopsis thaliana] |
| EMBL | CAN70805.1 | 0 | 3 | 473 | 24 | 493 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_568050.1 | 0 | 1 | 472 | 23 | 494 | AtGH9B18 (Arabidopsis thaliana glycosyl hydrolase 9B18); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| RefSeq | XP_002305460.1 | 0 | 1 | 475 | 1 | 474 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 0 | 6 | 470 | 3 | 430 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1ksc_A | 0 | 6 | 470 | 3 | 430 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1ks8_A | 0 | 6 | 470 | 3 | 430 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 4tf4_B | 0 | 7 | 466 | 5 | 438 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 4tf4_A | 0 | 7 | 466 | 5 | 438 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY264143 | 337 | 6 | 342 | 0 |
| DR921186 | 309 | 1 | 309 | 0 |
| DY274281 | 337 | 6 | 342 | 0 |
| DK499568 | 219 | 1 | 219 | 0 |
| DY267243 | 296 | 6 | 301 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
