| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra012074 |
| Family | GH5 |
| Protein Properties | Length: 1143 Molecular Weight: 127757 Isoelectric Point: 8.4057 |
| Chromosome | Chromosome/Scaffold: 07 Start: 10175062 End: 10179254 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 42 | 362 | 3.9e-33 |
| NGYPYYANGFNAYWLMYVASDPSQRPKISAAFQEASRHGLTVARTWAFSDGGYRPLQYSPGSYNEDMFQGLDFAIAEARRHGIKIILSFATNYVSFGGKK QYVDWARSRGRPVSSEDDFFTDSLVKDFYKNHIKAVLNRFNTFTKVHYRDDPTIMAWELMNEPRCPSDPTGRTIQAWITEMAAHVKSLDRNHLLEAGLEG FYGQSSPQSKTLNPPGQFGTDFIANNRIPGIDFVTVHSYPDEWFVDSSEQSQMEFLNKWLDAHIQDAQNVLHKPIIVAEFGKSTKKAGSAQRDLVFNTVY GKIYESAKRGGAAAGGLFWQL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1143 Download |
| MKPLCLVTIL SILIQQSYLK LGTDAFSRDG FVRTKGVQFS LNGYPYYANG FNAYWLMYVA 60 SDPSQRPKIS AAFQEASRHG LTVARTWAFS DGGYRPLQYS PGSYNEDMFQ GLDFAIAEAR 120 RHGIKIILSF ATNYVSFGGK KQYVDWARSR GRPVSSEDDF FTDSLVKDFY KNHIKAVLNR 180 FNTFTKVHYR DDPTIMAWEL MNEPRCPSDP TGRTIQAWIT EMAAHVKSLD RNHLLEAGLE 240 GFYGQSSPQS KTLNPPGQFG TDFIANNRIP GIDFVTVHSY PDEWFVDSSE QSQMEFLNKW 300 LDAHIQDAQN VLHKPIIVAE FGKSTKKAGS AQRDLVFNTV YGKIYESAKR GGAAAGGLFW 360 QLLGNGMDNF QDGYGIILSQ SSSTVNVIAQ QSRKLTLIRR IFARMINVEK WKRARGYGPI 420 ETVWRGPTPP SSRQQGSHIR VRERHSMILL TLVRNGGRFR HFCTASVEKP AFLVSNQLND 480 QLKFLVGSGN LQDARQVFDK TPHRDVYSWT TIIQGYIAAT NYDEALLLFS AMHVDDPRVS 540 ADSHVLSVAL KACGQTSNSS FGESLHAFAH KTHLLSDVYV ASSLLNLYKG TKMIDKCCRL 600 FSELPYRNTV TWTTIITGLV HARRHKEGLM YFSEMSRFEG LPDTFTFAIA LKACAGLRQV 660 IYGRGIHTHV ILKGFVAVLD VANSLFTMYT ECGEMQDGLR LFESMKERDV VSWTSLITAY 720 SRIGQEENAV NTFLQMRNSD VRPNEQTFAS AFAACASLSR LVWGEQLHCN VLSLGLGDYL 780 SVSNSMMNMY STCGELVSAS VLFRGMRCRD VISWITIIGG YSQGGFAEEG FEYFSWMRRS 840 GTKPTDFALA SLLSVSGNLA VLEQGRQVHA LSLYLGLEQS PTIRSALINM YSKCGSIVEA 900 SKVFEETDRG ADIVALTAMI NGYAEHGKSK EAIDLFEKSL NVGFRPDAVS FISVLTACSH 960 SGQLGLGFHY FNLMQEKYNM SPAKEHYGCM VDLLCRAGRL CEAERMIDEM PCEKDDVVWT 1020 TLLRACTAKR DVEVGRRAAE RILEVEPTSS TALVTLANIY SSLGKWKEAA VVRKSMKSKG 1080 VIKEPGWSSI LIKDRVSAFA SGGRSHPQSE DIYSVLELLV SVAERLRYGC EMKRDSEPIQ 1140 IL* 1200 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03081 | PLN03081 | 7.0e-44 | 513 | 1010 | 500 | + pentatricopeptide (PPR) repeat-containing protein; Provisional | ||
| PLN03077 | PLN03077 | 7.0e-52 | 627 | 1080 | 463 | + Protein ECB2; Provisional | ||
| PLN03077 | PLN03077 | 5.0e-53 | 478 | 950 | 474 | + Protein ECB2; Provisional | ||
| PLN03081 | PLN03081 | 2.0e-92 | 599 | 1124 | 528 | + pentatricopeptide (PPR) repeat-containing protein; Provisional | ||
| PLN03077 | PLN03077 | 4.0e-128 | 479 | 1136 | 659 | + Protein ECB2; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABB45851.1 | 0 | 451 | 1141 | 4 | 694 | hypothetical protein [Thellungiella halophila] |
| GenBank | ABB45852.1 | 0 | 1 | 414 | 1 | 417 | hypothetical protein [Thellungiella halophila] |
| RefSeq | NP_190368.1 | 0 | 449 | 1134 | 1 | 698 | pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_201447.1 | 0 | 1 | 420 | 1 | 422 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002310258.1 | 0 | 477 | 1124 | 3 | 648 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 26 | 396 | 1 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 41 | 406 | 22 | 383 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 41 | 406 | 22 | 383 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 41 | 406 | 22 | 383 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 41 | 406 | 22 | 383 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
