| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra012117 |
| Family | AA1 |
| Protein Properties | Length: 546 Molecular Weight: 60790.2 Isoelectric Point: 9.4698 |
| Chromosome | Chromosome/Scaffold: 07 Start: 9910000 End: 9912292 |
| Description | SKU5 similar 17 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 52 | 503 | 0 |
| VPQQVILINGQFPGPKLEVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNFTYKFQTKDQIGTYNYFPSTAFHKAAGGFGAIN IYARPRIPIPYPLPVADFTLLIGDWFKTNHKTLQQRLDSGGVLPSPDGMLINGQTQTTFTGDQGKTYMLRISNVGSSSTFNFRIQGHAMQVVEVEGSHVL QNVYESLDVHVGQSLSVLVTLNQPSKNYYIVASTRYTTSKLSVTGLLRYSNSGVPASGDMPPPPPEDLDWSLNQARSFRWNLTANAARPNPQGSFHYGTI TPTKSFVFSNSAPLFNGKQRYAVNGVSYVNSDTPLKLADHFNIPGVFSTNAIQSVPSSSPVTVATSVVQASLHDFLEVVFQNNEESMQSWHLDGYDFWVV GFGSGQWTPEQRPLYNLVDALTRHTTQVYPKSWTAILVSLDNQGMWNMRSAI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 546 Download |
| MKMAFRTRLS LLRLLLLVAL ALLSILVSVK GESPYKFYTW TVTYGVISPL GVPQQVILIN 60 GQFPGPKLEV VTNDNIILNL INKLDQPFLL TWNGIKQRKN SWQDGVLGTN CPIPPNSNFT 120 YKFQTKDQIG TYNYFPSTAF HKAAGGFGAI NIYARPRIPI PYPLPVADFT LLIGDWFKTN 180 HKTLQQRLDS GGVLPSPDGM LINGQTQTTF TGDQGKTYML RISNVGSSST FNFRIQGHAM 240 QVVEVEGSHV LQNVYESLDV HVGQSLSVLV TLNQPSKNYY IVASTRYTTS KLSVTGLLRY 300 SNSGVPASGD MPPPPPEDLD WSLNQARSFR WNLTANAARP NPQGSFHYGT ITPTKSFVFS 360 NSAPLFNGKQ RYAVNGVSYV NSDTPLKLAD HFNIPGVFST NAIQSVPSSS PVTVATSVVQ 420 ASLHDFLEVV FQNNEESMQS WHLDGYDFWV VGFGSGQWTP EQRPLYNLVD ALTRHTTQVY 480 PKSWTAILVS LDNQGMWNMR SAIWERQYLG QQFYLKVWDP VQSLANEYNP PDNLLLCGKA 540 IGRRV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02168 | PLN02168 | 8.0e-169 | 33 | 539 | 520 | + copper ion binding / pectinesterase | ||
| PLN02835 | PLN02835 | 0 | 30 | 545 | 516 | + oxidoreductase | ||
| PLN02354 | PLN02354 | 0 | 30 | 542 | 523 | + copper ion binding / oxidoreductase | ||
| PLN02991 | PLN02991 | 0 | 31 | 542 | 513 | + oxidoreductase | ||
| PLN02792 | PLN02792 | 0 | 30 | 540 | 516 | + oxidoreductase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61328.1 | 0 | 27 | 545 | 28 | 546 | pectinesterase-like protein [Arabidopsis thaliana] |
| DDBJ | BAB08634.1 | 0 | 27 | 545 | 26 | 544 | pectinesterase like protein [Arabidopsis thaliana] |
| RefSeq | NP_569041.1 | 0 | 27 | 545 | 28 | 546 | sks17 (SKU5 Similar 17); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | XP_002270831.1 | 0 | 14 | 544 | 6 | 535 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002522337.1 | 0 | 31 | 544 | 25 | 538 | multicopper oxidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 36 | 510 | 4 | 516 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1asq_A | 0 | 36 | 510 | 4 | 516 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1asp_B | 0 | 36 | 510 | 4 | 516 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1asp_A | 0 | 36 | 510 | 4 | 516 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1aso_B | 0 | 36 | 510 | 4 | 516 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
