CAZyme Information

Basic Information
SpeciesBrassica rapa
Cazyme IDBra012235
FamilyGT2
Protein PropertiesLength: 248 Molecular Weight: 27713.1 Isoelectric Point: 9.3162
ChromosomeChromosome/Scaffold: 07 Start: 9151022 End: 9152593
DescriptionNucleotide-diphospho-sugar transferases superfamily protein
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GT2171850
  SIIVPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEIVKQLQHLYGEDRILLRARAKKLGLGTAYIHGLKHATGDFVVIMDADLSHHPKYLP
  SFIKKQLETNASIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKSVLEDV
Full Sequence
Protein Sequence     Length: 248     Download
MADQNETKGE EGKHKYSIIV PTYNERLNIA LIVYLIFKHL RDVDFEIIVV DDGSPDGTQE    60
IVKQLQHLYG EDRILLRARA KKLGLGTAYI HGLKHATGDF VVIMDADLSH HPKYLPSFIK    120
KQLETNASIV TGTRYVKGGG VHGWNLMRKL TSRGANVLAQ TLLWPGVSDL TGSFRLYKKS    180
VLEDVISSCV SKGYVFQMEM IVRATRKGYH IEEVPITFVD RVFGTSKLGG SEIVEYLKGL    240
VYLLLTT* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam00535Glycos_transf_25.0e-3617185170+
cd04188DPG_synthase2.0e-4118227215+
cd04179DPM_DPG-synthase_like9.0e-7118204188+
cd06442DPM1_like2.0e-13418243226+
PLN02726PLN027268.0e-17711247238+
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAM63196.1062472242unknown [Arabidopsis thaliana]
RefSeqNP_564118.1012471246dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative [Arabidopsis thaliana]
RefSeqXP_002285933.1062472243PREDICTED: hypothetical protein [Vitis vinifera]
RefSeqXP_002300644.10102473240predicted protein [Populus trichocarpa]
RefSeqXP_002307788.10112472238predicted protein [Populus trichocarpa]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB2z86_D0.00000000081713696214A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp
PDB2z86_C0.00000000081713696214A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp
PDB2z86_B0.00000000081713696214A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp
Metabolic Pathways
Pathway NameReactionECProtein Name
dolichyl-diphosphooligosaccharide biosynthesis2.4.1.83-RXNEC-2.4.1.83dolichyl-phosphate β-D-mannosyltransferase
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
EX13657824812480
EX072349236132480
EX13777723412340
EX08888222512250
GR05429324812480
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_007_00839.1Aquca_007_00839.2
Arabidopsis lyrata889509
Arabidopsis thalianaAT1G20575.1
Brachypodium distachyonBradi2g19800.1
Brassica rapaBra025828
Capsella rubellaCarubv10010457mCarubv10010118m
Chlamydomonas reinhardtiiCre03.g150950.t1.1
Citrus clementinaCiclev10003501m
Citrus sinensisorange1.1g026146m
Cucumis sativusCucsa.272070.1Cucsa.272070.2Cucsa.272070.3Cucsa.272070.4
Eucalyptus grandisEucgr.F01769.1
Fragaria vescamrna01849.1-v1.0-hybrid
Glycine maxGlyma13g24040.2Glyma07g32560.4Glyma07g32560.3Glyma07g32560.1Glyma13g24040.1
Gossypium raimondiiGorai.005G113700.2Gorai.005G113700.1Gorai.005G113700.3Gorai.005G113700.4Gorai.002G116900.2
Gorai.002G116900.1
Linum usitatissimumLus10013228Lus10030748
Malus domesticaMDP0000284475
Manihot esculentacassava4.1_014960mcassava4.1_014955m
Medicago truncatulaMedtr2g097220.1
Mimulus guttatusmgv1a012434m
Oryza sativaLOC_Os03g60939.1
Panicum virgatumPavirv00006084mPavirv00010357mPavirv00010356mPavirv00041144mPavirv00011250m
Pavirv00010359m
Physcomitrella patensPp1s182_58V6.1
Phaseolus vulgarisPhvul.003G057700.1
Picea abiesMA_10426906g0010MA_158782g0100.50.214MA_159042g1170
Populus trichocarpaPotri.005G250900.1Potri.002G010300.1Potri.005G250900.2
Prunus persicappa010139m
Ricinus communis30170.m014358
Setaria italicaSi039247mSi037228m
Selaginella moellendorffii98270
Sorghum bicolorSb01g002910.1
Thellungiella halophilaThhalv10008599m
Vitis viniferaGSVIVT01008672001
Volvox carteriVocar20000557m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny