Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra012375 |
Family | GH28 |
Protein Properties | Length: 447 Molecular Weight: 48168.1 Isoelectric Point: 5.6607 |
Chromosome | Chromosome/Scaffold: 07 Start: 8124067 End: 8126021 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 401 | 0 |
KQACGTPKSVLLVPQGRSYLVNATKFNGPCERKLIIQIDGTIVAPEEPNNWDPKFQRIWLEFSKLKGVVFQGNGVIDGSGSKWWAASCKKNKSNPCKSAP TAFTIESSSGVKVRGLTIQNSQQMNFIIARSTSVRVYKVMVSSPGDSPNTDGIHITGSTNVVLQDCKIGTGDDCVSIVNASSNIKMKRIYCGPGHGISIG SLGNHNSTGIVTKVVLDTAFLKETTNGLRIKTYQGGSGYVKGVRFSNVVMQDVSNPILIDQFYCDNPTSCQNQTSAVKISQIMYRNITGTTKSEKAIKFA CSDAVPCSHIVLNNVNLEGKDGQVEAYCNSA |
Full Sequence |
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Protein Sequence Length: 447 Download |
MVYTDLDILK KLENFDIPED DDADDDYDTK LSDLASFTSR GSGKNLVNVD TFGAAGDGVS 60 DDTQAFISAW KQACGTPKSV LLVPQGRSYL VNATKFNGPC ERKLIIQIDG TIVAPEEPNN 120 WDPKFQRIWL EFSKLKGVVF QGNGVIDGSG SKWWAASCKK NKSNPCKSAP TAFTIESSSG 180 VKVRGLTIQN SQQMNFIIAR STSVRVYKVM VSSPGDSPNT DGIHITGSTN VVLQDCKIGT 240 GDDCVSIVNA SSNIKMKRIY CGPGHGISIG SLGNHNSTGI VTKVVLDTAF LKETTNGLRI 300 KTYQGGSGYV KGVRFSNVVM QDVSNPILID QFYCDNPTSC QNQTSAVKIS QIMYRNITGT 360 TKSEKAIKFA CSDAVPCSHI VLNNVNLEGK DGQVEAYCNS AEGFGYGVIH PSADCLYSHD 420 DKCLDQSDKS GHVLVTEEAE TGHDEL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-82 | 40 | 393 | 357 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-85 | 74 | 401 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 3.0e-86 | 45 | 416 | 380 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 5.0e-103 | 47 | 411 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-128 | 35 | 431 | 399 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC98004.1 | 0 | 1 | 446 | 24 | 457 | Similar to gb |
GenBank | AAF79584.1 | 0 | 1 | 446 | 671 | 1161 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
RefSeq | NP_173760.2 | 0 | 1 | 446 | 25 | 460 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_177207.1 | 0 | 1 | 446 | 24 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002317091.1 | 0 | 8 | 420 | 1 | 407 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 2e-23 | 146 | 389 | 80 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-23 | 146 | 389 | 80 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-23 | 146 | 389 | 80 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-23 | 146 | 389 | 80 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 2e-23 | 146 | 389 | 80 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EV524933 | 216 | 232 | 447 | 0 |
EV170498 | 198 | 250 | 447 | 0 |
EV168323 | 198 | 250 | 447 | 0 |
EV170490 | 198 | 250 | 447 | 0 |
EV550328 | 224 | 83 | 306 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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