| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra012440 |
| Family | GT31 |
| Protein Properties | Length: 637 Molecular Weight: 71889.1 Isoelectric Point: 5.27 |
| Chromosome | Chromosome/Scaffold: 07 Start: 7584625 End: 7586932 |
| Description | galactosyltransferase1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT31 | 399 | 582 | 0 |
| KRRMAVRRTWMQYDDVRSGRVAVRFFVGLHKSPIVNLELWNEARTYGDVQLMPFVDYYSLISWKTLAICIFGTEVDSAKFVMKTDDDAFVRVDEVLLSLS LINNTRGLIYGLINSDSQPIRNPASKWYISYEEWPEEKYPPWAHGPGYIVSRDIAESVSKLFKEGNLKMFKLEDVAMGIWIADL | |||
| Full Sequence |
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| Protein Sequence Length: 637 Download |
| MKRFYGGLLV ASMCMFFTVY RYIDLKPPVE KPYITATVLT PNTTLPLEWL RITVPDFMNE 60 ARNTQEALSG DEIVTVSSLF VERNVSKEER EPLLTWNRLQ SLVDNAQSLA NGVDAIKEAG 120 IVWESLLSAV EAEKLADANV NQTRRGREEL CPQFLSKMNA TEDDGSSLKL KIPCGLTQGS 180 SVTVIGIPDG LVGSFRIDLT GQPLPGEPDP PIIVHYNVRL LGDKWTEDPV IVQNSWTVAR 240 DWGFEERCPN YDPDLNKKVD DLDQCDKVVG REVNRTSSTS LQSNTTRAVA ASKHERYFPF 300 KQGFLSVATL RVGTEGMQMT VDGKHITSFA FRDTLEPWLV SEVRITGDLK LLSILASGLP 360 TSEESEHVVD LEALKAPPLS PLRPLDLVIG VFSTVNNFKR RMAVRRTWMQ YDDVRSGRVA 420 VRFFVGLHKS PIVNLELWNE ARTYGDVQLM PFVDYYSLIS WKTLAICIFG TEVDSAKFVM 480 KTDDDAFVRV DEVLLSLSLI NNTRGLIYGL INSDSQPIRN PASKWYISYE EWPEEKYPPW 540 AHGPGYIVSR DIAESVSKLF KEGNLKMFKL EDVAMGIWIA DLRKHGLEPH YENDGRIISE 600 GCKDGYVVAH YQSPAEMTCL WRKYQETKRS LCCRGW* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00908 | Gal-bind_lectin | 4.0e-19 | 173 | 354 | 182 | + Galactoside-binding lectin. Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction. | ||
| cd00070 | GLECT | 2.0e-21 | 169 | 354 | 186 | + Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation. | ||
| pfam00337 | Gal-bind_lectin | 1.0e-23 | 169 | 354 | 186 | + Galactoside-binding lectin. This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5). | ||
| pfam01762 | Galactosyl_T | 1.0e-32 | 399 | 583 | 191 | + Galactosyltransferase. This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2. | ||
| PLN03133 | PLN03133 | 0 | 1 | 635 | 639 | + beta-1,3-galactosyltransferase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0006486 | protein glycosylation |
| GO:0008378 | galactosyltransferase activity |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF87039.1 | 0 | 13 | 636 | 1 | 684 | AC006535_17 T24P13.20 [Arabidopsis thaliana] |
| RefSeq | NP_174003.1 | 0 | 1 | 636 | 1 | 643 | GALT1 (GALACTOSYLTRANSFERASE1); UDP-galactose:N-glycan beta-1,3-galactosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002269607.1 | 0 | 1 | 633 | 1 | 633 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002316134.1 | 0 | 1 | 633 | 1 | 629 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522444.1 | 0 | 1 | 633 | 3 | 629 | transferase, transferring glycosyl groups, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EV151735 | 244 | 126 | 369 | 0 |
| EL350926 | 285 | 186 | 470 | 0 |
| ES803599 | 344 | 151 | 494 | 0 |
| GT034010 | 299 | 316 | 614 | 0 |
| FN762099 | 385 | 233 | 608 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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