| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra012458 |
| Family | CBM43 |
| Protein Properties | Length: 197 Molecular Weight: 19868.1 Isoelectric Point: 4.9185 |
| Chromosome | Chromosome/Scaffold: 07 Start: 7499376 End: 7500608 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 22 | 102 | 2.6e-27 |
| CVCKDGDEQALQKVIDYACGSGADCSQIEQNGPCFQPNTVKNHCDVAVNSFYQKKASTGATCDFNGAAVVSTSPPSNASSC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 197 Download |
| MAIFLSLFLI FSMVTYSNAA ICVCKDGDEQ ALQKVIDYAC GSGADCSQIE QNGPCFQPNT 60 VKNHCDVAVN SFYQKKASTG ATCDFNGAAV VSTSPPSNAS SCLPSSGSTS TPTTGTPSTG 120 NLTTGTPSTG TPSTGNSTFG MPTNPTTGVP TSSVFPGTSM GPSGSTGFDP SGGEKHYVQT 180 TTVIVLTTIA AVALRF* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR04096 | dnd_rel_methyl | 0.002 | 35 | 70 | 43 | + DNA phosphorothioation-associated putative methyltransferase. Members of this protein family show distant local sequence similarity to a number of S-adenosyl-methionine-dependent methyltransferases. The family is identified by Partial Phylogenetic Profiling as closely tied to the DNA phosphorothioation system (dnd), and members are found adjacent to dnd genes in at least 13 species (Streptomyces lividans TK24, Shewanella frigidimarina NCIMB 400, Mycobacterium abscessus ATCC 19977, Nostoc punctiforme PCC 73102, Vibrio fischeri MJ11, etc.). The DNA phosphorothioation enables a novel form of restriction enzyme activity. Most members of this family appear in species with the DNA phosphorothioation system [DNA metabolism, Restriction/modification]. | ||
| pfam07983 | X8 | 3.0e-16 | 22 | 90 | 75 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 8.0e-29 | 22 | 100 | 80 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG52501.1 | 0 | 1 | 181 | 1 | 207 | AC018364_19 unknown protein; 45065-49536 [Arabidopsis thaliana] |
| GenBank | AAM62861.1 | 0 | 1 | 194 | 1 | 220 | unknown [Arabidopsis thaliana] |
| DDBJ | BAD43464.1 | 0 | 1 | 109 | 1 | 109 | predicted GPI-anchored protein [Arabidopsis thaliana] |
| RefSeq | NP_173968.1 | 0 | 1 | 195 | 1 | 196 | beta-1,3-glucanase-related [Arabidopsis thaliana] |
| RefSeq | NP_564957.1 | 0 | 1 | 194 | 1 | 220 | PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4); callose binding / polysaccharide binding [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 0.000000000004 | 20 | 105 | 12 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
