CAZyme Information

Basic Information
SpeciesBrassica rapa
Cazyme IDBra012548
FamilyAA3
Protein PropertiesLength: 771 Molecular Weight: 84690.7 Isoelectric Point: 7.8825
ChromosomeChromosome/Scaffold: 03 Start: 23643396 End: 23647199
DescriptionLong-chain fatty alcohol dehydrogenase family protein
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
AA32257560
  GIINLKKPREAVTKKLTDHGFTVSTQKSNNNRSSISNPVMTIRCDAVVVGSGSGGGVVAGLLAKAGFKVLVVEKGNYYARSNLSQLEGQAMDEMYLSGGL
  LATSDMNVVILAGSTVGGGSTINWSASIKTPEHVMKEWAEKSELELFESDLYREAMDVVCERMGVQCGFVEEGFNNEVLRKGCEELGLKVKNIPRNASKD
  HYCGFCSLGCKKGQKQGTSETWLVDLVESGNGSILPGCKAMEVLYECEGGNKKKTSTGIAFAFGEDIYVVESRATVVACGALRTPHLLKRSGLKNGNIGR
  NLCLHPVVMAWGWFPEEEKWPEKKKKSYEGGIMTAMSSVLNAEAKTTYGETVIQTPSLHPGMFSGVIPWTSSNDFKTRMLKFSRTAHVFTLLRDKGTGTI
  NSKSYIDYNLNDEDEESLKKGLESVLNILIAAGAEEIGTHNSKGKSLNVRTASAVEIERFVREESSKSLKDLSGQICSAHQMGSCRMGIRPEESAVRPMG
  ETWEVEGLFVADTSVFPTALGVNPMVTVQSIA
Full Sequence
Protein Sequence     Length: 771     Download
MEYQNKSSLH KDSTEAKLDV EFGSPRQQDE TKTLYANSLT AREMESLVAI CDTLIPSIDG    60
AEVGHLDDGV AGYYSASASH TGTPDRVARL MSQRLHHPRK WILRVGLWSL STWIGSLVLC    120
GRRSFIGGFP FFQRFCRLPK KQREETLLNW ASSYFLLLRM FFRSIKLITA LVFFTQVDEK    180
GKNLAWKAIG YNGPSSDHSD HEEELNETKT NKEMPKEIFG PLYNGIINLK KPREAVTKKL    240
TDHGFTVSTQ KSNNNRSSIS NPVMTIRCDA VVVGSGSGGG VVAGLLAKAG FKVLVVEKGN    300
YYARSNLSQL EGQAMDEMYL SGGLLATSDM NVVILAGSTV GGGSTINWSA SIKTPEHVMK    360
EWAEKSELEL FESDLYREAM DVVCERMGVQ CGFVEEGFNN EVLRKGCEEL GLKVKNIPRN    420
ASKDHYCGFC SLGCKKGQKQ GTSETWLVDL VESGNGSILP GCKAMEVLYE CEGGNKKKTS    480
TGIAFAFGED IYVVESRATV VACGALRTPH LLKRSGLKNG NIGRNLCLHP VVMAWGWFPE    540
EEKWPEKKKK SYEGGIMTAM SSVLNAEAKT TYGETVIQTP SLHPGMFSGV IPWTSSNDFK    600
TRMLKFSRTA HVFTLLRDKG TGTINSKSYI DYNLNDEDEE SLKKGLESVL NILIAAGAEE    660
IGTHNSKGKS LNVRTASAVE IERFVREESS KSLKDLSGQI CSAHQMGSCR MGIRPEESAV    720
RPMGETWEVE GLFVADTSVF PTALGVNPMV TVQSIAYCIG LNVVGALKKK *             780
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
TIGR03970Rv06970.00168175681+
TIGR01810betA1.0e-5436741346+
pfam05199GMC_oxred_C1.0e-21617759150+
COG2303BetA5.0e-28312757501+
pfam00732GMC_oxred_N3.0e-78315531223+
Gene Ontology
GO TermDescription
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0055114oxidation-reduction process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCAA18625.15e-26487286putative protein [Arabidopsis thaliana]
EMBLCAA18625.1017677085677putative protein [Arabidopsis thaliana]
RefSeqNP_193673.20447701725alcohol oxidase-related [Arabidopsis thaliana]
RefSeqXP_002269629.101477016786PREDICTED: hypothetical protein [Vitis vinifera]
RefSeqXP_002328753.10447701744predicted protein [Populus trichocarpa]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3ljp_B0.0000000008403755170518A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
PDB3ljp_A0.0000000008403755170518A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
PDB3nne_H0.000000001403755170518A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
PDB3nne_G0.000000001403755170518A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
PDB3nne_F0.000000001403755170518A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
DC8838504633157700
DK515004250202690
HO794753751377670
BX8368012854327160
BX836801517177671e-18
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_089_00009.1Aquca_049_00132.1Aquca_034_00307.1Aquca_034_00304.1
Arabidopsis lyrata914728491906479855470376
Arabidopsis thalianaAT4G19380.1AT4G28570.1AT3G23410.1AT1G03990.1
Brachypodium distachyonBradi3g28677.1Bradi3g28657.1Bradi3g49085.1
Brassica rapaBra024190Bra013391Bra015283Bra001912Bra014947
Carica papayaevm.model.supercontig_165.33evm.model.supercontig_44.31evm.model.supercontig_2124.1
Capsella rubellaCarubv10004418mCarubv10004208mCarubv10012453mCarubv10004212mCarubv10013046m
Citrus clementinaCiclev10011111mCiclev10004403mCiclev10004405mCiclev10018992m
Citrus sinensisorange1.1g003990morange1.1g004496m
Cucumis sativusCucsa.037200.2Cucsa.037200.1Cucsa.035240.1Cucsa.255570.1
Eucalyptus grandisEucgr.H03017.2Eucgr.H03017.1Eucgr.H00753.1Eucgr.K02114.1Eucgr.D02566.1
Eucgr.D02568.1
Fragaria vescamrna08288.1-v1.0-hybridmrna11513.1-v1.0-hybridmrna08285.1-v1.0-hybrid
Glycine maxGlyma09g35210.2Glyma01g35620.1Glyma16g16415.1Glyma16g08300.2Glyma10g32640.2
Glyma12g15940.1Glyma19g34960.1Glyma06g42400.2Glyma03g32220.2
Gossypium raimondiiGorai.001G179800.3Gorai.001G179800.2Gorai.001G179800.1Gorai.011G177100.3Gorai.011G177100.2
Gorai.011G177100.1Gorai.006G252500.1
Linum usitatissimumLus10003621Lus10024922Lus10035673Lus10008239Lus10022903
Lus10037257Lus10011800
Malus domesticaMDP0000233110MDP0000173300MDP0000208936MDP0000197715
Manihot esculentacassava4.1_004067mcassava4.1_002349mcassava4.1_002619mcassava4.1_002379mcassava4.1_025870m
Medicago truncatulaMedtr5g025650.1Medtr8g072210.1Medtr4g081080.1Medtr1g075650.1Medtr4g080890.1
Mimulus guttatusmgv1a001761mmgv1a022390mmgv1a001868mmgv1a001883mmgv1a001896m
Oryza sativaLOC_Os10g33540.1LOC_Os10g33520.1LOC_Os10g33460.1LOC_Os02g40840.1
Panicum virgatumPavirv00054947m
Physcomitrella patensPp1s58_61V6.1Pp1s7_216V6.1Pp1s48_250V6.1Pp1s2_413V6.1
Phaseolus vulgarisPhvul.002G122600.1Phvul.003G278200.1Phvul.007G124200.1Phvul.001G162800.1Phvul.011G136600.1
Picea abiesMA_10427118g0010MA_9032943g0010MA_9483g0010MA_10427421g0010MA_242814g0010
Populus trichocarpaPotri.004G234900.2Potri.004G234900.1Potri.010G069100.1Potri.008G169300.1Potri.002G259700.1
Prunus persicappa014756mppa018458mppa021498m
Ricinus communis29827.m00265529981.m00058628492.m000467
Setaria italicaSi034362mSi034354mSi034359mSi016380m
Selaginella moellendorffii1140891168557460173531
Sorghum bicolorSb01g019470.1Sb01g019460.1Sb01g019480.1Sb04g026370.1Sb04g026390.1
Thellungiella halophilaThhalv10024717mThhalv10024496mThhalv10024528mThhalv10020141mThhalv10006882m
Vitis viniferaGSVIVT01036891001GSVIVT01027855001GSVIVT01028371001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)