y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra012604 |
Family | GH17 |
Protein Properties | Length: 398 Molecular Weight: 44120.6 Isoelectric Point: 8.5136 |
Chromosome | Chromosome/Scaffold: 03 Start: 23252370 End: 23254347 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 34 | 352 | 0 |
LGINYGQVGNNLPSPDKVINLLRSLRITKTRIYDTNPQILTSFANSNIEIIVTIENQVLTLLQDPQQALQWVDSHIKPYIPATRITGIMVGNELFTDEDS SLIGYMMPAIINIHKALVQLGLDRYIEVSSPSSLAVLAESYPPSAGSFKPEVSSVMQQLLQFLEATRSPFWINAYPYFAYKDNPNKIPIDYVLFNRNIGM TDPNTRLHYDNMMYAQVDAVAFAAAKLGYRNIEVRVAETGWPSKGDAGEVGASPTNAATYNRNLMMRQFAGEGTPARRNSRLDVYIFALFNEDMKPGPTS EKNYGIFRPDGSLAYNLGF |
Full Sequence |
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Protein Sequence Length: 398 Download |
MTSRTVARLP NLINVFLLLS LVLSGNILQK ATSLGINYGQ VGNNLPSPDK VINLLRSLRI 60 TKTRIYDTNP QILTSFANSN IEIIVTIENQ VLTLLQDPQQ ALQWVDSHIK PYIPATRITG 120 IMVGNELFTD EDSSLIGYMM PAIINIHKAL VQLGLDRYIE VSSPSSLAVL AESYPPSAGS 180 FKPEVSSVMQ QLLQFLEATR SPFWINAYPY FAYKDNPNKI PIDYVLFNRN IGMTDPNTRL 240 HYDNMMYAQV DAVAFAAAKL GYRNIEVRVA ETGWPSKGDA GEVGASPTNA ATYNRNLMMR 300 QFAGEGTPAR RNSRLDVYIF ALFNEDMKPG PTSEKNYGIF RPDGSLAYNL GFSTMSTTTA 360 NSESVAYSSY ATKAKMTLEY WTILMLAMIQ VVVSRLS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 8.0e-7 | 263 | 343 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 1.0e-88 | 34 | 352 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16806.1 | 0 | 1 | 378 | 1 | 378 | beta-1, 3-glucanase-like protein [Arabidopsis thaliana] |
RefSeq | NP_174300.2 | 0 | 15 | 395 | 15 | 406 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_193568.2 | 0 | 1 | 396 | 1 | 396 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002306003.1 | 0 | 32 | 351 | 2 | 321 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332000.1 | 0 | 12 | 375 | 10 | 375 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 34 | 352 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 34 | 353 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 34 | 353 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 34 | 353 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 34 | 353 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |