| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra012613 |
| Family | GH28 |
| Protein Properties | Length: 795 Molecular Weight: 87161.2 Isoelectric Point: 8.8536 |
| Chromosome | Chromosome/Scaffold: 03 Start: 23218509 End: 23221978 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 67 | 415 | 0 |
| MACKSSSSSVDLIIPRGEFHVGPIRFSGPCTNVTHLTVRVKGHLKASTDLSKYRSGGGWIEFGWINGLTLTGGGTFDGQGALAWPFNNCITDSHCKLLPT SLKFVGMNRTIVRRISSVNSKFFHMALVQCRDFKGTRLNITAPSDSPNTDGIHIERSSNVYFSRSHIATGDDCVSIGQGNSQITITSIKCGPGHGISVGS LGRYPNEKDVKGLVVRDCKMSGTTNGIRIKTWADSPGLSAATNMTFQNIIMSNVTNPIIIDQSYCPFSSCSSNVPSKVKLSEIYFKNIRGTSSSKVAVQL HCSEGMPCKKVYLENVHLYLASSSGGGSGKQQSSNGGNEAVSSSCRYVR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 795 Download |
| MSIVEMKFTI FHYLRVLFFF FFVALSSYSF VVRGDKSSVL IVDVRSFGAR ANDHRDNTKA 60 FVAAWDMACK SSSSSVDLII PRGEFHVGPI RFSGPCTNVT HLTVRVKGHL KASTDLSKYR 120 SGGGWIEFGW INGLTLTGGG TFDGQGALAW PFNNCITDSH CKLLPTSLKF VGMNRTIVRR 180 ISSVNSKFFH MALVQCRDFK GTRLNITAPS DSPNTDGIHI ERSSNVYFSR SHIATGDDCV 240 SIGQGNSQIT ITSIKCGPGH GISVGSLGRY PNEKDVKGLV VRDCKMSGTT NGIRIKTWAD 300 SPGLSAATNM TFQNIIMSNV TNPIIIDQSY CPFSSCSSNV PSKVKLSEIY FKNIRGTSSS 360 KVAVQLHCSE GMPCKKVYLE NVHLYLASSS GGGSGKQQSS NGGNEAVSSS CRYVRANYIG 420 TQSPPPCDQN LEANLIDATE PSSSEPQTKN YKRWIRLSIY VFFVLFFQPL ATILGRLYYE 480 NGGESTYVVT LLPLIGFPVL ILFNFFSQLR QQPKSADTNV NHSPSFTTLA SVYLCTGLIL 540 SAYAYLYAIG LLYLPVSTFS LILASQLAFT AFFSYFLNSQ KFTPFIVNSL FLLTVSSALL 600 VVDTESQDTT NVSRVQYVLG FICTLGASAG IGLLLSLIQL LFRKVFKEHT SSVVMDLTIY 660 QSLVASCVVL IGLFASGEWR TLPSEMRNYK LGQVSYVVTL VSAAISWQVY TVGLVGLIFE 720 SSSVFSNSIT AVGLPIVPVI AVIVFHDKME ASKIFSIVLA IWGFLSFVYQ HYLDEKKLKT 780 CNTDPVENDG TQTW* 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 3.0e-68 | 37 | 384 | 349 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-75 | 37 | 427 | 395 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-76 | 42 | 384 | 347 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-87 | 71 | 384 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 0 | 35 | 427 | 393 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA16789.1 | 0 | 60 | 427 | 1 | 361 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CAA16792.1 | 0 | 428 | 793 | 763 | 1127 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_001031663.1 | 0 | 428 | 786 | 12 | 373 | PUP7 (PURINE PERMEASE 7); purine transmembrane transporter [Arabidopsis thaliana] |
| RefSeq | NP_001031664.1 | 0 | 428 | 793 | 12 | 376 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_193552.1 | 0 | 11 | 427 | 4 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-24 | 138 | 384 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000000002 | 214 | 371 | 152 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000002 | 214 | 371 | 152 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000002 | 214 | 371 | 152 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000002 | 214 | 371 | 152 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
