| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra012676 |
| Family | GH14 |
| Protein Properties | Length: 549 Molecular Weight: 61446.1 Isoelectric Point: 7.0597 |
| Chromosome | Chromosome/Scaffold: 03 Start: 22804681 End: 22806581 |
| Description | chloroplast beta-amylase |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 88 | 502 | 0 |
| FVMLPLDTVTMSGHLNKQRAMNASLMALKGAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEE ISKNPDLVYTDKSGRRNPEYISLGCDSVPVLRGRTPIQVYSDFMRSFRERFDNYIGGVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMK SSLQAYAESIGKTNWGTSGPHDAGEYKNLPEDTEFFRRDGTWNSEYGKFFMEWYSGKLLEHGDQLLSSAKAIFQGSGAKLSGKVAGIHWHYNTRSHAAEL TAGYYNTRNHDGYLPIAKMFNKHGVVLNFTCMEMKDGEQPEHANCSPEGLVKQVQNATRQAGTELAGENALERYDSSAFGQVVATNRSDSGNGLTAFTYL RMNKRLFEGQNWQQL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 549 Download |
| MELTLNSSSS LIKRKDAKSS RTQENSSNMS FAKTKPPTYQ FQAKSSVKEM KFTHEKTYKP 60 ESETTERWEK LHVLSYPHPK NDSSVPVFVM LPLDTVTMSG HLNKQRAMNA SLMALKGAGV 120 EGVMVDAWWG LVEKDGPMKY NWEGYAELIQ MVQKHGLKLQ VVMSFHQCGG NVGDSCSIPL 180 PPWVLEEISK NPDLVYTDKS GRRNPEYISL GCDSVPVLRG RTPIQVYSDF MRSFRERFDN 240 YIGGVIAEIQ VGMGPCGELR YPSYPESNGT WRFPGIGEFQ CYDKYMKSSL QAYAESIGKT 300 NWGTSGPHDA GEYKNLPEDT EFFRRDGTWN SEYGKFFMEW YSGKLLEHGD QLLSSAKAIF 360 QGSGAKLSGK VAGIHWHYNT RSHAAELTAG YYNTRNHDGY LPIAKMFNKH GVVLNFTCME 420 MKDGEQPEHA NCSPEGLVKQ VQNATRQAGT ELAGENALER YDSSAFGQVV ATNRSDSGNG 480 LTAFTYLRMN KRLFEGQNWQ QLVEFVKNMK EGGHGRRLSE EDTTGSDLYV GGFVGSKISQ 540 TVEEAVLV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 4.0e-150 | 85 | 509 | 432 | + beta-amylase | ||
| PLN02803 | PLN02803 | 0 | 1 | 548 | 549 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 85 | 521 | 443 | + beta-amylase; Provisional | ||
| pfam01373 | Glyco_hydro_14 | 0 | 88 | 505 | 431 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
| PLN02801 | PLN02801 | 0 | 85 | 509 | 433 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB46051.1 | 0 | 50 | 548 | 1 | 498 | putative beta-amylase [Arabidopsis thaliana] |
| EMBL | CAN62440.1 | 0 | 1 | 547 | 1 | 543 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_567523.1 | 0 | 1 | 548 | 1 | 548 | CT-BMY (CHLOROPLAST BETA-AMYLASE); beta-amylase [Arabidopsis thaliana] |
| RefSeq | XP_002282871.1 | 0 | 1 | 547 | 1 | 543 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326690.1 | 0 | 1 | 548 | 1 | 547 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdp_A | 0 | 85 | 509 | 12 | 441 | D Chain D, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis Virus |
| PDB | 1q6c_A | 0 | 85 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1bfn_A | 0 | 85 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1ukp_D | 0 | 85 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_C | 0 | 85 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| BU103692 | 453 | 85 | 537 | 0 |
| HO794833 | 426 | 123 | 548 | 0 |
| HO781538 | 405 | 29 | 432 | 0 |
| HO825836 | 388 | 159 | 546 | 0 |
| CK121499 | 262 | 154 | 415 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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