| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra012756 |
| Family | PL1 |
| Protein Properties | Length: 390 Molecular Weight: 42116 Isoelectric Point: 9.9814 |
| Chromosome | Chromosome/Scaffold: 03 Start: 22403280 End: 22404812 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 125 | 308 | 0 |
| ITFARDMVIRLRTELEVKSHKTIDGRGVKVDIGNGPCISIKRASNVIIHGITVHDCRLSKGFDGDGIRVFQSRNVWIDHCHLSRCQDGLIDVVTSSTAVT ISNNRLINHQKAMLLGHSDNHMADKNMKVTVAFNVFGPGLTERMPRVRRGYAHVANNMYNKWNLYAIGGSADPTIFSESNHFVA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 390 Download |
| MASLVLLTFS LLFATFSSPL VDAFNYSNDS TFAAPAPNPI DAFNYSDGNY TLGAALNPID 60 ACWRRDAKWS TNRQALARCA VGFGKGALGG SKGPIYVVTS PADDAGKPKP GTLRFGATQS 120 NPLWITFARD MVIRLRTELE VKSHKTIDGR GVKVDIGNGP CISIKRASNV IIHGITVHDC 180 RLSKGFDGDG IRVFQSRNVW IDHCHLSRCQ DGLIDVVTSS TAVTISNNRL INHQKAMLLG 240 HSDNHMADKN MKVTVAFNVF GPGLTERMPR VRRGYAHVAN NMYNKWNLYA IGGSADPTIF 300 SESNHFVAPD RKEHKEVTKR MDKSPAAKNW KWSTNKDVFI NGAFFTPSGG PGVPPPYAAG 360 ERFPVAPGAQ VPALTASAGP LRCAPGRAC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13229 | Beta_helix | 0.003 | 162 | 230 | 70 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| pfam13229 | Beta_helix | 7.0e-5 | 157 | 236 | 80 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| COG3866 | PelB | 1.0e-29 | 136 | 306 | 183 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-56 | 143 | 306 | 181 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-75 | 130 | 310 | 192 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28424.1 | 0 | 54 | 389 | 33 | 368 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_172656.1 | 0 | 1 | 389 | 1 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_174324.1 | 0 | 54 | 389 | 33 | 368 | pectate lyase family protein [Arabidopsis thaliana] |
| Swiss-Prot | O65388 | 0 | 1 | 389 | 1 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
| RefSeq | XP_002518442.1 | 0 | 56 | 389 | 43 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 57 | 379 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 57 | 379 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-22 | 85 | 308 | 19 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 4e-16 | 139 | 306 | 66 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmv_A | 4e-16 | 139 | 306 | 66 | 246 | A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 |
