Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra012932 |
Family | CE8 |
Protein Properties | Length: 297 Molecular Weight: 32830.1 Isoelectric Point: 8.4156 |
Chromosome | Chromosome/Scaffold: 03 Start: 21456258 End: 21457457 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 2 | 285 | 0 |
QVRQNGRGDFKTLTEAINSVPVGNKERVIIKLGHGEYKEKVTIDRNKPFITLYGDPNAMPVLTFDGTAAEYGTVDSATLIVLSDYFMAINIIVKNSAPMP DGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLSTQLNVVGDGLRVITAHAGKSTEEKSGYSFVHCKVTG TGTGIYLGRAWMSHPKVVYAYTDMSSVVNPSGWHENTQTERDKTVFYGEYKCSGPGSRKEKRVKYTQDIDNIEANSFISLGYIQ |
Full Sequence |
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Protein Sequence Length: 297 Download |
MQVRQNGRGD FKTLTEAINS VPVGNKERVI IKLGHGEYKE KVTIDRNKPF ITLYGDPNAM 60 PVLTFDGTAA EYGTVDSATL IVLSDYFMAI NIIVKNSAPM PDGKRKGAQA LSMRISGNKA 120 AFYNCKFYGY QDTICDDTGN HFFKDCYIEG TFDFIFGSGR SLYLSTQLNV VGDGLRVITA 180 HAGKSTEEKS GYSFVHCKVT GTGTGIYLGR AWMSHPKVVY AYTDMSSVVN PSGWHENTQT 240 ERDKTVFYGE YKCSGPGSRK EKRVKYTQDI DNIEANSFIS LGYIQGSSWL LPPHSL* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 3.0e-85 | 3 | 292 | 298 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 5.0e-88 | 3 | 292 | 299 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 3.0e-88 | 1 | 290 | 290 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 9.0e-102 | 4 | 292 | 296 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 3 | 296 | 295 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG52566.1 | 0 | 9 | 296 | 51 | 338 | AC010675_14 putative pectin methylesterase; 8433-9798 [Arabidopsis thaliana] |
DDBJ | BAB09012.1 | 0 | 1 | 296 | 69 | 364 | pectin methylesterase-like protein [Arabidopsis thaliana] |
EMBL | CAB87930.1 | 0 | 9 | 296 | 55 | 342 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_200976.1 | 0 | 2 | 296 | 44 | 338 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_568181.1 | 0 | 9 | 296 | 74 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 2e-39 | 3 | 290 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 2e-36 | 3 | 290 | 11 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3uw0_A | 5e-19 | 10 | 277 | 43 | 330 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 5e-18 | 11 | 274 | 18 | 327 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-18 | 11 | 274 | 18 | 327 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX189924 | 250 | 30 | 279 | 0 |
EV535265 | 249 | 36 | 283 | 0 |
GR458538 | 279 | 13 | 291 | 0 |
EW737264 | 282 | 12 | 293 | 0 |
EV162897 | 226 | 24 | 249 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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