| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra012981 |
| Family | CBM43 |
| Protein Properties | Length: 223 Molecular Weight: 22932.5 Isoelectric Point: 7.678 |
| Chromosome | Chromosome/Scaffold: 03 Start: 21222139 End: 21223815 |
| Description | plasmodesmata callose-binding protein 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 49 | 130 | 3.4e-30 |
| WCVCKTGLSDTVLQSTLDYACGNGADCNPTHPKAPCFDPDNVRSHCNYAVNSFFQKKHQAPGTCDFSGTATPTNSDPSYSGC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 223 Download |
| MAALVLSLLL LAMAGHSSKN FHSSFRFLGI SLVSLTVRVS SLSGYGASWC VCKTGLSDTV 60 LQSTLDYACG NGADCNPTHP KAPCFDPDNV RSHCNYAVNS FFQKKHQAPG TCDFSGTATP 120 TNSDPSYSGC TFPTSASGSG GSTTVTPGTT NPKGSSTTLP GGNGNSPFSG TSSTNGVFGN 180 NSTGINPDYT TESSAFALRN SSTFLTYLLL IALSGFCSFM ML* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 4.0e-17 | 48 | 119 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-33 | 48 | 130 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM64809.1 | 0 | 47 | 222 | 19 | 193 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_196417.1 | 0 | 47 | 222 | 19 | 193 | E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3); callose binding / polysaccharide binding [Arabidopsis thaliana] |
| RefSeq | NP_200921.2 | 0 | 47 | 222 | 19 | 201 | PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1); callose binding / polysaccharide binding [Arabidopsis thaliana] |
| RefSeq | NP_564059.1 | 0 | 1 | 200 | 1 | 165 | PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3); callose binding / polysaccharide binding [Arabidopsis thaliana] |
| RefSeq | XP_002284112.1 | 8.99634e-43 | 1 | 140 | 1 | 112 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 1e-21 | 48 | 134 | 12 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
