| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra013052 |
| Family | GH35 |
| Protein Properties | Length: 847 Molecular Weight: 95587.1 Isoelectric Point: 9.3895 |
| Chromosome | Chromosome/Scaffold: 03 Start: 20759364 End: 20763435 |
| Description | glycosyl hydrolase family 35 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 50 | 354 | 0 |
| LIINGKRELLYSGSIHYPRSTPDMWPKIIKRAKQGGLNTIQTYVFWNFHELEQGKFNFSGRADLVKFIKLIEKNGMYVTLRLGPFIQAEWTHGGLPYWLR EIPGIFFRTDNKPFKEHTERYVRVILDMMKEEKLFAPQGGPIILGQIENEYSAVQRAYKNDGSNYIKWASKLVHSMNLGIPWVMCKQNDAPDPMINACNG RHCGDTFPGPNREHKPSLWTENWTTQFRVYGDPPVQRSVEDIAFSVARFFSKNGSHVNYYMYHGGTNFGRTSAHYVTTRYYDDAPLDEYGLEKEPKYGHL KHLHN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 847 Download |
| MRIHSSNHPW LLLAILVVLL CFPGALSSKD EEKATSKNTK KEVTYDGTSL IINGKRELLY 60 SGSIHYPRST PDMWPKIIKR AKQGGLNTIQ TYVFWNFHEL EQGKFNFSGR ADLVKFIKLI 120 EKNGMYVTLR LGPFIQAEWT HGGLPYWLRE IPGIFFRTDN KPFKEHTERY VRVILDMMKE 180 EKLFAPQGGP IILGQIENEY SAVQRAYKND GSNYIKWASK LVHSMNLGIP WVMCKQNDAP 240 DPMINACNGR HCGDTFPGPN REHKPSLWTE NWTTQFRVYG DPPVQRSVED IAFSVARFFS 300 KNGSHVNYYM YHGGTNFGRT SAHYVTTRYY DDAPLDEYGL EKEPKYGHLK HLHNALNLCK 360 KALLWGQSRT EKPGKDTEIR YYEQPGTKVC AAFLANNNTE SAEIIKFRGK DYVIPPRSIS 420 ILPDCKTVVY STGEIVSHHT ARNFMKSKKA NKKFDFKVFT ETVPQELKGD SYVPVELYGL 480 AKDESDYGWY TTNFKIDDSD LKKKGGKPTV RVASLGHALH AWLNGEYLGN GHGSHDEKSF 540 VFQKPIALKE GDNHLTMLGV LTGFPDSGSY LEHRFTGPRS VSISGLSSGP MDLTEKSKWG 600 NKVGMEGEKL DIHTEKGLKK VKWEKFSGKA PGLTWYQTYF DAPESLSPAA IRMNGMGKGL 660 IWVNGEGVGR YWMSFLSPLG KSTQIEYHIP RSFLKPKKNL LVIFEEEPNV NPELIDFVIV 720 NRDTVCSYIG EDYTPSVRHW ARKNDNVQAI TDDVQLTANL KCSGTKKISA VEFASFGNPT 780 GSCGNFTRGS CHAPVTKQVV EKYCLGKAEC VIPVNKSTFQ EDKKDSCPKV VKTLAVQVKC 840 GRPKKN* 900 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02449 | Glyco_hydro_42 | 4.0e-7 | 65 | 200 | 154 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
| pfam02140 | Gal_Lectin | 7.0e-21 | 760 | 840 | 85 | + Galactose binding lectin domain. | ||
| COG1874 | LacA | 4.0e-21 | 43 | 200 | 164 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam01301 | Glyco_hydro_35 | 2.0e-149 | 49 | 356 | 322 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 43 | 840 | 829 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD24606.1 | 0 | 46 | 846 | 31 | 832 | putative beta-galactosidase [Arabidopsis thaliana] |
| EMBL | CAA17766.1 | 0 | 39 | 846 | 50 | 831 | beta-galactosidase-like protein [Arabidopsis thaliana] |
| EMBL | CAB64750.1 | 0 | 2 | 840 | 6 | 837 | putative beta-galactosidase [Arabidopsis thaliana] |
| RefSeq | NP_179264.2 | 0 | 42 | 846 | 43 | 848 | BGAL13; beta-galactosidase [Arabidopsis thaliana] |
| RefSeq | NP_567973.1 | 0 | 39 | 846 | 37 | 845 | BGAL11 (beta-galactosidase 11); beta-galactosidase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 9.99995e-41 | 49 | 352 | 14 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 4e-34 | 42 | 352 | 10 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 4e-34 | 42 | 352 | 10 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
