| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra013297 |
| Family | GH17 |
| Protein Properties | Length: 402 Molecular Weight: 44481.9 Isoelectric Point: 6.2973 |
| Chromosome | Chromosome/Scaffold: 01 Start: 4818630 End: 4820411 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH17 | 34 | 352 | 0 |
| LGINYGQVGNNLPSPDKVINLLRSLRITKTRIYDSNPQILSAFANSNIEIIVTIENQVLTLLQDPQQALQWVDSHIKPYIPATRITGIMVGNELFTDEDS SLIGYMMPAMINIHKALVQLGLDRYVQVSSPSSLAVLAESYPPSAGSFKPEVSSVMQQLLQFLEATRSPFWINAYPYFAYKDNPDKIPIDYVLFNRNVGM TDPNTRLHYDNMMYAQVDALAFAAAKLGYRNIEVRVAETGWPSKGDAGEVGASPANAATYNRNLMMRQFAGEGTPARRNSRLDVYIFALFNEDMKPGPTS EKNYGIFRPDGSLAYNLGF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 402 Download |
| MTSRTFTRLP NLINVLLLLS LVFSGNILQS VTSLGINYGQ VGNNLPSPDK VINLLRSLRI 60 TKTRIYDSNP QILSAFANSN IEIIVTIENQ VLTLLQDPQQ ALQWVDSHIK PYIPATRITG 120 IMVGNELFTD EDSSLIGYMM PAMINIHKAL VQLGLDRYVQ VSSPSSLAVL AESYPPSAGS 180 FKPEVSSVMQ QLLQFLEATR SPFWINAYPY FAYKDNPDKI PIDYVLFNRN VGMTDPNTRL 240 HYDNMMYAQV DALAFAAAKL GYRNIEVRVA ETGWPSKGDA GEVGASPANA ATYNRNLMMR 300 QFAGEGTPAR RNSRLDVYIF ALFNEDMKPG PTSEKNYGIF RPDGSLAYNL GFSTMSTTTA 360 NSESVTYSSS ATEAMNRATT TLECWTILIL AMIQVVISRL F* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 3.0e-7 | 263 | 343 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-95 | 34 | 352 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM96962.1 | 0 | 15 | 399 | 15 | 406 | putative beta-1,3-glucanase precursor [Arabidopsis thaliana] |
| EMBL | CAA16806.1 | 0 | 1 | 373 | 1 | 373 | beta-1, 3-glucanase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_174300.2 | 0 | 15 | 399 | 15 | 406 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_193568.2 | 0 | 1 | 401 | 1 | 397 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002332000.1 | 0 | 12 | 373 | 10 | 373 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 34 | 352 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 34 | 353 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0 | 34 | 353 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur7_B | 0 | 34 | 353 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 34 | 353 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
