CAZyme Information

Basic Information
SpeciesBrassica rapa
Cazyme IDBra013391
FamilyAA3
Protein PropertiesLength: 509 Molecular Weight: 55077 Isoelectric Point: 6.5773
ChromosomeChromosome/Scaffold: 01 Start: 5365170 End: 5366696
DescriptionLong-chain fatty alcohol dehydrogenase family protein
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
AA314933.36312e-44
  MTIQCDAVVVGSGSGGGVVAGMLAKAGYKVLVVEKGNYYARSNLSLHEGQALDEMYLSGGLLATTDMDVVILAGSTVGGGSTINWSASIKTPEHVMKEWS
  EKSELEMFGSHLYREAMDVVCERMGVQCEFLEEGFNNEILRKGCENLGLPVKNIPRNAPSDHYCGFCCLGCKKGQKQGTSETWLVDLVESGNGLILPGCE
  AMEVLYECKGGKKTKTSTGIAFAFGKDIYMVESRATIVACGALRTPHLLKHSGLKNGSIGRNLCLHPVVMAWGWFPEEEEWPEKKKRSYQGGIMTAMSSV
  VNEETKNSYGETVIQTPSLHPGLFSGVIPWTSSKEFKSRMLKFSRTAHVFTLLRDKGTGTINSKSSIEYNLNNEDEESLKKGLERVLNILTAAGAEEIGT
  HNSEGKSLNVKTTSAVEIERFVREESSKSLKDLSGQICSAHQMGSCRMGTSPEVSAVKPTGETWEVEGLFVADTSVFPTALGVNPMVTVQSIA
Full Sequence
Protein Sequence     Length: 509     Download
MTIQCDAVVV GSGSGGGVVA GMLAKAGYKV LVVEKGNYYA RSNLSLHEGQ ALDEMYLSGG    60
LLATTDMDVV ILAGSTVGGG STINWSASIK TPEHVMKEWS EKSELEMFGS HLYREAMDVV    120
CERMGVQCEF LEEGFNNEIL RKGCENLGLP VKNIPRNAPS DHYCGFCCLG CKKGQKQGTS    180
ETWLVDLVES GNGLILPGCE AMEVLYECKG GKKTKTSTGI AFAFGKDIYM VESRATIVAC    240
GALRTPHLLK HSGLKNGSIG RNLCLHPVVM AWGWFPEEEE WPEKKKRSYQ GGIMTAMSSV    300
VNEETKNSYG ETVIQTPSLH PGLFSGVIPW TSSKEFKSRM LKFSRTAHVF TLLRDKGTGT    360
INSKSSIEYN LNNEDEESLK KGLERVLNIL TAAGAEEIGT HNSEGKSLNV KTTSAVEIER    420
FVREESSKSL KDLSGQICSA HQMGSCRMGT SPEVSAVKPT GETWEVEGLF VADTSVFPTA    480
LGVNPMVTVQ SIAYCIGLNV VDALKRKK* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
TIGR01810betA0.000241747863+
PRK02106PRK021063.0e-541747964+
pfam05199GMC_oxred_C6.0e-23354496150+
COG2303BetA8.0e-2623494526+
pfam00732GMC_oxred_N1.0e-7453268222+
Gene Ontology
GO TermDescription
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0055114oxidation-reduction process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCAA18625.101508172678putative protein [Arabidopsis thaliana]
RefSeqNP_193673.201508220726alcohol oxidase-related [Arabidopsis thaliana]
RefSeqXP_002269629.101508271787PREDICTED: hypothetical protein [Vitis vinifera]
RefSeqXP_002328753.101508231745predicted protein [Populus trichocarpa]
RefSeqXP_002519938.101508203709electron carrier, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3ljp_B0.0000005140492170518A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
PDB3ljp_A0.0000005140492170518A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
PDB2jbv_B0.0000008140492170518A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism
PDB2jbv_A0.0000008140492170518A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism
PDB3nne_H0.0000008140492170518A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
DC883850462525080
BX8368013081464530
EV0202822192494670
HO79475351915040
BX836801504555049e-20
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_089_00009.1Aquca_049_00132.1Aquca_034_00307.1Aquca_034_00304.1
Arabidopsis lyrata914728491906479855470376
Arabidopsis thalianaAT4G19380.1AT4G28570.1AT3G23410.1AT1G03990.1
Brachypodium distachyonBradi3g28677.1Bradi3g28657.1Bradi3g49085.1
Brassica rapaBra012548Bra024190Bra015283Bra001912Bra014947
Carica papayaevm.model.supercontig_165.33evm.model.supercontig_44.31evm.model.supercontig_2124.1
Capsella rubellaCarubv10004418mCarubv10004208mCarubv10012453mCarubv10004212mCarubv10013046m
Citrus clementinaCiclev10011111mCiclev10004403mCiclev10004405mCiclev10018992m
Citrus sinensisorange1.1g003990morange1.1g004496m
Cucumis sativusCucsa.037200.2Cucsa.037200.1Cucsa.035240.1Cucsa.255570.1
Eucalyptus grandisEucgr.H03017.2Eucgr.H03017.1Eucgr.H00753.1Eucgr.K02114.1Eucgr.D02566.1
Eucgr.D02568.1
Fragaria vescamrna08288.1-v1.0-hybridmrna11513.1-v1.0-hybridmrna08285.1-v1.0-hybrid
Glycine maxGlyma09g35210.2Glyma01g35620.1Glyma16g16415.1Glyma16g08300.2Glyma10g32640.2
Glyma12g15940.1Glyma19g34960.1Glyma06g42400.2Glyma03g32220.2
Gossypium raimondiiGorai.001G179800.3Gorai.001G179800.2Gorai.001G179800.1Gorai.011G177100.3Gorai.011G177100.2
Gorai.011G177100.1Gorai.006G252500.1
Linum usitatissimumLus10003621Lus10024922Lus10035673Lus10008239Lus10022903
Lus10037257Lus10011800
Malus domesticaMDP0000233110MDP0000173300MDP0000208936MDP0000197715
Manihot esculentacassava4.1_004067mcassava4.1_002349mcassava4.1_002619mcassava4.1_002379mcassava4.1_025870m
Medicago truncatulaMedtr5g025650.1Medtr8g072210.1Medtr4g081080.1Medtr1g075650.1Medtr4g080890.1
Mimulus guttatusmgv1a001761mmgv1a022390mmgv1a001868mmgv1a001883mmgv1a001896m
Oryza sativaLOC_Os10g33540.1LOC_Os10g33520.1LOC_Os10g33460.1LOC_Os02g40840.1
Panicum virgatumPavirv00054947m
Physcomitrella patensPp1s58_61V6.1Pp1s7_216V6.1Pp1s48_250V6.1Pp1s2_413V6.1
Phaseolus vulgarisPhvul.002G122600.1Phvul.003G278200.1Phvul.007G124200.1Phvul.001G162800.1Phvul.011G136600.1
Picea abiesMA_10427118g0010MA_9032943g0010MA_9483g0010MA_10427421g0010MA_242814g0010
Populus trichocarpaPotri.004G234900.2Potri.004G234900.1Potri.010G069100.1Potri.008G169300.1Potri.002G259700.1
Prunus persicappa014756mppa018458mppa021498m
Ricinus communis29827.m00265529981.m00058628492.m000467
Setaria italicaSi034362mSi034354mSi034359mSi016380m
Selaginella moellendorffii1140891168557460173531
Sorghum bicolorSb01g019470.1Sb01g019460.1Sb01g019480.1Sb04g026370.1Sb04g026390.1
Thellungiella halophilaThhalv10024717mThhalv10024496mThhalv10024528mThhalv10020141mThhalv10006882m
Vitis viniferaGSVIVT01036891001GSVIVT01027855001GSVIVT01028371001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)