| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra013501 |
| Family | AA7 |
| Protein Properties | Length: 533 Molecular Weight: 60233.6 Isoelectric Point: 9.7597 |
| Chromosome | Chromosome/Scaffold: 01 Start: 6000381 End: 6001979 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 68 | 517 | 0 |
| FTSLKPILTLKPKSESEIKKAILCSKKLGVQVRTLSGGHDYEGLSYLSLTPFIIIDLVNLRTITINLTEETAWIQSGATLGELYYKIAKTSKIHAFAAGT CPSVGVGGHFSGGGLGAMMRKHGLASDSVVDARLMDVNGRILNRRTMGEDLFWALRGGGAASFGVVLSWKVKLARVPEKVTCFISHSMGASMNKLVHRWQ YIGAELDEDLFIRVIIDNTKGGGQRRVQTAFQALFLGGVDKLIPLMNQKFPELGLQAQDCKEMSWIESVMFFIWKSGQPLETLLNRDLRYEDLYIKAKSD FVQKPVPENVFEEVTKRFLEKETPLMILEPLGGKINEVSESESPYPHRRGNLYNIQYMVKWRVNTVEEMNKHVTWMRMLYDYMTPYVSSSPRGAYLNYRD LDLGNNTGSKTSFEDARVWGEKYYRGNFKKLGLVKGKIDPTNFFRNEQSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 533 Download |
| MRDLALCLIL FFLAKRVSSV PTKEQFENCL STISKNPRNL TKHTSDSRLY TASLKTSSPS 60 SNFLNLNFTS LKPILTLKPK SESEIKKAIL CSKKLGVQVR TLSGGHDYEG LSYLSLTPFI 120 IIDLVNLRTI TINLTEETAW IQSGATLGEL YYKIAKTSKI HAFAAGTCPS VGVGGHFSGG 180 GLGAMMRKHG LASDSVVDAR LMDVNGRILN RRTMGEDLFW ALRGGGAASF GVVLSWKVKL 240 ARVPEKVTCF ISHSMGASMN KLVHRWQYIG AELDEDLFIR VIIDNTKGGG QRRVQTAFQA 300 LFLGGVDKLI PLMNQKFPEL GLQAQDCKEM SWIESVMFFI WKSGQPLETL LNRDLRYEDL 360 YIKAKSDFVQ KPVPENVFEE VTKRFLEKET PLMILEPLGG KINEVSESES PYPHRRGNLY 420 NIQYMVKWRV NTVEEMNKHV TWMRMLYDYM TPYVSSSPRG AYLNYRDLDL GNNTGSKTSF 480 EDARVWGEKY YRGNFKKLGL VKGKIDPTNF FRNEQSIPPL FNFSKDKNQM YC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 4.0e-11 | 73 | 520 | 470 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam08031 | BBE | 2.0e-17 | 461 | 518 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| pfam01565 | FAD_binding_4 | 7.0e-18 | 73 | 210 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK56258.1 | 0 | 14 | 521 | 17 | 530 | AF367269_1 AT4g20860/T13K14_20 [Arabidopsis thaliana] |
| GenBank | AAN60251.1 | 0 | 1 | 444 | 1 | 451 | unknown [Arabidopsis thaliana] |
| GenBank | ABC41951.1 | 0 | 5 | 520 | 7 | 524 | FAD-linked oxidoreductase 2 [Glycine max] |
| RefSeq | NP_193818.1 | 0 | 14 | 521 | 17 | 530 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_199249.1 | 0 | 1 | 520 | 4 | 530 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 27 | 520 | 5 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 40 | 521 | 17 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 40 | 521 | 17 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 22 | 521 | 7 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 22 | 521 | 7 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
