| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra013585 |
| Family | PL1 |
| Protein Properties | Length: 394 Molecular Weight: 43264.2 Isoelectric Point: 8.7539 |
| Chromosome | Chromosome/Scaffold: 01 Start: 6480013 End: 6483890 |
| Description | root hair specific 14 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 114 | 313 | 0 |
| ITFAKDMVLTLENELMVNSYKTIDGRGTKVEIAYGPCITIQEVTNVIVHGISIHHCKPGKYGMVRSSTTHVGHRKGSDGDAIAISGSSNIWIDHCYLASC TDGLIDVIHASTGITISNNYFTQHDKVMLLGHNDDFVQDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEGNYFIAS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 394 Download |
| MTPFFILCLS VTLFLCQSLV GAINNGYYGY NPVASYLPEK PQNIMNPVDS CWRLKSDWTA 60 NRKDLADCAV GFGSSALGGK KGNIYVVTNP NDNAANPQPG SLRYGVIQDK PLWITFAKDM 120 VLTLENELMV NSYKTIDGRG TKVEIAYGPC ITIQEVTNVI VHGISIHHCK PGKYGMVRSS 180 TTHVGHRKGS DGDAIAISGS SNIWIDHCYL ASCTDGLIDV IHASTGITIS NNYFTQHDKV 240 MLLGHNDDFV QDVKMKVTVA FNHFGPGLVE RMPRVRRGYA HVANNRYDKW IMYAIGGSAD 300 PTIFSEGNYF IASDNSNSKE VTKREVKGGW NNWRWRTSKD VFKNGAYFVP SGYGSVALPY 360 SSAQRFPVAP GNLVPSLTAG AGPLNCYRNR PCY* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 8.0e-29 | 78 | 385 | 329 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-62 | 127 | 310 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-77 | 119 | 314 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172656.1 | 0 | 1 | 392 | 1 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_193939.1 | 0 | 1 | 393 | 1 | 394 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_193940.1 | 0 | 1 | 393 | 1 | 394 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263615.1 | 0 | 5 | 392 | 6 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002518442.1 | 0 | 30 | 392 | 28 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 46 | 382 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 46 | 382 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 2e-16 | 128 | 310 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 5e-16 | 120 | 312 | 56 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 0.0000000000002 | 71 | 319 | 22 | 296 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
