| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra013692 |
| Family | CE8 |
| Protein Properties | Length: 347 Molecular Weight: 37844.6 Isoelectric Point: 5.1923 |
| Chromosome | Chromosome/Scaffold: 01 Start: 7176800 End: 7179211 |
| Description | methylesterase PCR A |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 35 | 330 | 0 |
| LVVAKDGSGDYVTVKEAVGAAPENSPTRLIIYIKQGVYSEIVEIGSSKTNITFVGDGQDSTILTGSLNKKDGVKTFFSATVAVNGDGFVAQDLCFQNTAG PSKSQAVALRVSAERAVIYRCRIDGYQDTLYANKGTQFYRDTYITGTVDFIFGHASAVFQYCQIVARKPNPGQSNMVTAQNSDNPSENSAFTLQQCNITA SADLSPVKSKVKTYLGRPWGIMSTVVVMESFIDDHIDPAGWYPWDIGKEPSPSIYYGEFGNYGPGANTSERVTWKGFRAIQDPKEAERFTVGQLIH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 347 Download |
| MIFTSCLALA VDEFPSWIEK NFLQTSKVLK MNANLVVAKD GSGDYVTVKE AVGAAPENSP 60 TRLIIYIKQG VYSEIVEIGS SKTNITFVGD GQDSTILTGS LNKKDGVKTF FSATVAVNGD 120 GFVAQDLCFQ NTAGPSKSQA VALRVSAERA VIYRCRIDGY QDTLYANKGT QFYRDTYITG 180 TVDFIFGHAS AVFQYCQIVA RKPNPGQSNM VTAQNSDNPS ENSAFTLQQC NITASADLSP 240 VKSKVKTYLG RPWGIMSTVV VMESFIDDHI DPAGWYPWDI GKEPSPSIYY GEFGNYGPGA 300 NTSERVTWKG FRAIQDPKEA ERFTVGQLIH GELWLNTTGV PYETGL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02468 | PLN02468 | 2.0e-126 | 7 | 346 | 343 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 1.0e-129 | 12 | 346 | 338 | + pectinesterase | ||
| PLN02488 | PLN02488 | 1.0e-160 | 15 | 346 | 336 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 4.0e-171 | 34 | 332 | 299 | + Pectinesterase. | ||
| PLN02301 | PLN02301 | 1.0e-171 | 13 | 346 | 337 | + pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAD29733.1 | 0 | 13 | 346 | 218 | 554 | pectin methylesterase [Sesbania rostrata] |
| RefSeq | NP_172624.1 | 0 | 12 | 346 | 220 | 557 | PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
| Swiss-Prot | Q1JPL7 | 0 | 12 | 346 | 220 | 557 | PME18_ARATH RecName: Full=Pectinesterase/pectinesterase inhibitor 18; AltName: Full=AtPMEpcrA; Contains: RecName: Full=Pectinesterase inhibitor 18; AltName: Full=Pectin methylesterase inhibitor 18; Contains: RecName: Full=Bifunctional pectinesterase 18/rRNA N-glycosylase; Short=PE 18; AltName: Full=Ribosome-inactivating protein; AltName: Full=Pectin methylesterase 18; AltName: Full=Pectin methylesterase 4; Short=AtPME4; Flags: Precursor |
| RefSeq | XP_002266980.1 | 0 | 13 | 346 | 194 | 528 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002518523.1 | 0 | 13 | 346 | 213 | 547 | Pectinesterase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 33 | 346 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 34 | 346 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_B | 4e-25 | 34 | 321 | 5 | 327 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_A | 4e-25 | 34 | 321 | 5 | 327 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntp_B | 4e-25 | 34 | 321 | 5 | 327 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777316 | 339 | 13 | 347 | 0 |
| JG606995 | 305 | 43 | 347 | 0 |
| GO241843 | 281 | 43 | 323 | 0 |
| GO241839 | 297 | 43 | 339 | 0 |
| DV711860 | 317 | 13 | 326 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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