| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra013697 |
| Family | GH28 |
| Protein Properties | Length: 494 Molecular Weight: 54401.4 Isoelectric Point: 5.7014 |
| Chromosome | Chromosome/Scaffold: 01 Start: 7215442 End: 7218519 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 98 | 444 | 0 |
| YGGSLLFVPAGRWLTGSFNLTSHFTLFLHRDAVLLASQEESDYEVIEPLPSYGRGRDTDGGRFISLLFGSNLTDVVITGENGTIDGQGEPWWGKFKRGEL KYTRPYLIEIMHSDGIQISNLTFLNSPSWHIHPVYSSNIVIQDLTILAPVTVPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDQYGINYGMPTKQL LIRRLTCISPDSAVIALGSEMSGGIEDVRAEDIIAINSESGIRIKTAIGRGGYVKDVYVRGMTMQTMKYVFWMTGSYGSHPDEHYDPNALPVIQNINYQD MVAENVTMPAQLAGITGDQFTGICISNVTITLSKKPKKVLWNCTDVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 494 Download |
| MRSLLYTIGS LLILLLSHDG GFTGAADAEH TFRATDIHTH RHRRNHGHRR GEEFEYSALS 60 CRAYSASLDE FGAVGDGVTS NTAAFRDAVS QLSHFADYGG SLLFVPAGRW LTGSFNLTSH 120 FTLFLHRDAV LLASQEESDY EVIEPLPSYG RGRDTDGGRF ISLLFGSNLT DVVITGENGT 180 IDGQGEPWWG KFKRGELKYT RPYLIEIMHS DGIQISNLTF LNSPSWHIHP VYSSNIVIQD 240 LTILAPVTVP NTDGINPDSC TNTRIEDCYI VSGDDCIAVK SGWDQYGINY GMPTKQLLIR 300 RLTCISPDSA VIALGSEMSG GIEDVRAEDI IAINSESGIR IKTAIGRGGY VKDVYVRGMT 360 MQTMKYVFWM TGSYGSHPDE HYDPNALPVI QNINYQDMVA ENVTMPAQLA GITGDQFTGI 420 CISNVTITLS KKPKKVLWNC TDVSGYTSGV TPEPCQLLPE KQPGTVVPCN FPESSIPIDE 480 VKLQRCYSRR RLM* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-17 | 70 | 361 | 307 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-23 | 65 | 365 | 313 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-25 | 54 | 365 | 325 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-29 | 166 | 443 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-54 | 55 | 361 | 330 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91278.1 | 0 | 16 | 493 | 17 | 494 | glycoside hydrolase family 28 protein [Capsella rubella] |
| RefSeq | NP_194081.1 | 0 | 16 | 493 | 18 | 495 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002278930.1 | 0 | 48 | 486 | 35 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299511.1 | 0 | 50 | 491 | 37 | 478 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 54 | 493 | 41 | 480 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.99965e-42 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.99965e-42 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.99965e-42 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.99965e-42 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000002 | 110 | 401 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
