| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra013800 |
| Family | PL4 |
| Protein Properties | Length: 646 Molecular Weight: 73828.1 Isoelectric Point: 4.8407 |
| Chromosome | Chromosome/Scaffold: 01 Start: 7815756 End: 7819057 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 5 | 622 | 0 |
| SSVHLDVKDNHVVMKNGIVELTISKPDGFVTGISYHGVNNLLESHNEDYDRGYWDLVWSEYGTPGTTGNSERIKGTSFEVVVENEELVEISFTRKWDSSL QDHIAPINVDKRFIMRKDVTGFYSYGIFEHLAEWPAFNLPQTRIVYKLRKDKFRYMAVADNRQRKMPLPEDRLGKRGRPLAYPEAVLLVHPVEEEFKGEV DDKYEYSCENRDLKVHGWISHNLDLGCWQIIPSNEFRSGGLVKQNLTSHVGPISLAMFISAHYAGEDMVMKVKAGESWKKVFGPVFTYLNCLPDQTSDPL SLWQDAKNQMLIEVQSWPYGFPASEDYALSDKRGCINGRLLVQDKSLSDELLPANGAFIGLAPPGEVGSWQTESKGYQFWTEADADGYFTINNIREGEYN LNAYVTGWTGDYQYEELITITAGCDIDVSNIIYEPPRDGPTVWEIGIPDRSAAEFFVPDPNPKYINKLYIGHPDRFRQYGLWERYTELYPKEDLVFTIGV SDYKKDWFFAHVTRKIGDDTYEKTTWQIKFKLEKVQENSTYKLRIALATANVAELQVRMNEDESEKSLIFTTGVIGHDNTIARHGIHGLYRLYNVDVPSE KLLEGDNTLFLTQAMTTV | |||
| Full Sequence |
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| Protein Sequence Length: 646 Download |
| MSDQSSVHLD VKDNHVVMKN GIVELTISKP DGFVTGISYH GVNNLLESHN EDYDRGYWDL 60 VWSEYGTPGT TGNSERIKGT SFEVVVENEE LVEISFTRKW DSSLQDHIAP INVDKRFIMR 120 KDVTGFYSYG IFEHLAEWPA FNLPQTRIVY KLRKDKFRYM AVADNRQRKM PLPEDRLGKR 180 GRPLAYPEAV LLVHPVEEEF KGEVDDKYEY SCENRDLKVH GWISHNLDLG CWQIIPSNEF 240 RSGGLVKQNL TSHVGPISLA MFISAHYAGE DMVMKVKAGE SWKKVFGPVF TYLNCLPDQT 300 SDPLSLWQDA KNQMLIEVQS WPYGFPASED YALSDKRGCI NGRLLVQDKS LSDELLPANG 360 AFIGLAPPGE VGSWQTESKG YQFWTEADAD GYFTINNIRE GEYNLNAYVT GWTGDYQYEE 420 LITITAGCDI DVSNIIYEPP RDGPTVWEIG IPDRSAAEFF VPDPNPKYIN KLYIGHPDRF 480 RQYGLWERYT ELYPKEDLVF TIGVSDYKKD WFFAHVTRKI GDDTYEKTTW QIKFKLEKVQ 540 ENSTYKLRIA LATANVAELQ VRMNEDESEK SLIFTTGVIG HDNTIARHGI HGLYRLYNVD 600 VPSEKLLEGD NTLFLTQAMT TVGAFNGLMY DYIRLEEPCL ASNFH* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 5.0e-32 | 336 | 435 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-50 | 447 | 636 | 192 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 6.0e-71 | 13 | 295 | 286 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 2.0e-89 | 8 | 204 | 197 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL15345.1 | 0 | 160 | 645 | 1 | 487 | AT4g24430/T22A6_260 [Arabidopsis thaliana] |
| GenBank | AAU90065.1 | 0 | 160 | 645 | 1 | 487 | At4g24430 [Arabidopsis thaliana] |
| RefSeq | NP_567703.4 | 0 | 1 | 645 | 1 | 646 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002527353.1 | 0 | 7 | 638 | 6 | 633 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 7 | 638 | 6 | 634 | lyase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FD941014 | 257 | 388 | 644 | 0 |
| CD813831 | 254 | 2 | 255 | 0 |
| DY293973 | 330 | 5 | 332 | 0 |
| FY792769 | 270 | 338 | 607 | 0 |
| FC896579 | 284 | 70 | 351 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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