| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra013833 |
| Family | PL1 |
| Protein Properties | Length: 407 Molecular Weight: 44614.4 Isoelectric Point: 7.9379 |
| Chromosome | Chromosome/Scaffold: 01 Start: 7997804 End: 7999354 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 119 | 326 | 0 |
| VIQDEPLWIIFQRDMTIHLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKPGGNAMVRSSPRHFGWRTISDGDGVSIFGGSHVWV DHCSLSNCDDGLIDAIMGSTAITLSNNYMTHHDKVMLLGHSDTYTRDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS QGNRFVAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 407 Download |
| MQTKKLFISI VSFLLYSPLM FSSPVPDPEA IVEEVHKSIN ASGAARRKLG YLSCSTGNPI 60 DDCWRCDSNW EKNRQRLADC AIGFGKNAIG GRDGRIYVVT DSGNDDPVTP KPGTLRHAVI 120 QDEPLWIIFQ RDMTIHLKEE LIMNSFKTID GRGASVHIAG GPCITIQYVT NIIIHGIHIH 180 DCKPGGNAMV RSSPRHFGWR TISDGDGVSI FGGSHVWVDH CSLSNCDDGL IDAIMGSTAI 240 TLSNNYMTHH DKVMLLGHSD TYTRDKNMQI TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY 300 THWEMYAIGG SANPTINSQG NRFVAPNIRF SKEVTKHEDA PESEWKSWNW RSSGDLLLNG 360 AFFTPSGGAS SSSYAKASSL GARPSSLVGP LTLGSGALNC RKGSRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-25 | 145 | 323 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-72 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-82 | 132 | 327 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK25850.1 | 0 | 1 | 406 | 3 | 408 | AF360140_1 putative pectate lyase [Arabidopsis thaliana] |
| GenBank | AAM65103.1 | 0 | 1 | 406 | 1 | 406 | putative pectate lyase [Arabidopsis thaliana] |
| EMBL | CAA22985.1 | 0 | 1 | 406 | 1 | 404 | putative pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_567707.1 | 0 | 1 | 406 | 3 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002322215.1 | 0 | 19 | 406 | 19 | 403 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 58 | 367 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 58 | 367 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-17 | 77 | 324 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 0.000000000000004 | 148 | 335 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 2bsp_A | 0.000000000000009 | 148 | 335 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
