| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra013956 |
| Family | GH35 |
| Protein Properties | Length: 733 Molecular Weight: 81724.8 Isoelectric Point: 7.8858 |
| Chromosome | Chromosome/Scaffold: 01 Start: 8682010 End: 8686273 |
| Description | beta-galactosidase 12 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH35 | 10 | 92 | 3.3e-40 |
| TINGQRRILLSGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGQYYFEDRYDLVKFVKLVQQAGLYVHIRIGP | |||
| GH35 | 94 | 331 | 0 |
| KFVKLVQQDGLYVHIRIGPYVCAEWNFGGFPVWLKYVPGMAFRTDNEPFKAAMQKFTEKIVGMMKEEKLFETQGGPIILSQIENEYGPIEWEIGAPGKAY TKWAAQMAEGLSTGVPWIMCKQDDAPDSIINTCNGYYCENFKPNSDNKPKMWTENWTGWFTEFGGAVPYRPAEDIAFSVARFIQNGGSFINYYMYHGGTN FDRTAGEFMATSYDYDAPLDEYGLPREPKYSHLTKLHK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 733 Download |
| MVTYDHKAVT INGQRRILLS GSIHYPRSTP EMWPDLIQKA KDGGLDVIQT YVFWNGHEPS 60 PGQYYFEDRY DLVKFVKLVQ QAGLYVHIRI GPSKFVKLVQ QDGLYVHIRI GPYVCAEWNF 120 GGFPVWLKYV PGMAFRTDNE PFKAAMQKFT EKIVGMMKEE KLFETQGGPI ILSQIENEYG 180 PIEWEIGAPG KAYTKWAAQM AEGLSTGVPW IMCKQDDAPD SIINTCNGYY CENFKPNSDN 240 KPKMWTENWT GWFTEFGGAV PYRPAEDIAF SVARFIQNGG SFINYYMYHG GTNFDRTAGE 300 FMATSYDYDA PLDEYGLPRE PKYSHLTKLH KVIKLCEPAL VSVDPTVTSL GDKQEAHVFK 360 SKSSCAAFLS NYNSSSAARV SFGGSTYDLP PWSVSILPNC KTEYYNTAKV QVRAPSIHMK 420 MVPTDTQLSW GSYSEEIPSP NYNGTFAKDG LVEQISITRD KTDYFWYLTD ITISADEKFL 480 KTGEDPLLTI GSAGHALSVF VNGQLAGTAY GSLEKPKLTF SQKIKLAAGV NKLALLSIAV 540 GLPNVGLHYE TRNSGVLGPV TLEGVNSGTW DMSKWKWSYK IGTKGEALSI HTVTGSSTVE 600 WKEGPLVAKK QPLTWYKSTF ETPAGNEPLA LDMNTMGKGQ VWINGQNIGR HWPAYKARGK 660 CERCSYAGTF NENKCLSNCG EASQRWYHVP RSWLKPSANL IVVLEEWGGD PNGISLVRRT 720 SKKIASESIF SG* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1874 | LacA | 6.0e-21 | 2 | 324 | 375 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam01301 | Glyco_hydro_35 | 3.0e-158 | 11 | 333 | 339 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 2 | 732 | 732 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK96780.1 | 0 | 2 | 720 | 29 | 724 | beta-galactosidase [Arabidopsis thaliana] |
| EMBL | CAB39679.1 | 0 | 1 | 722 | 28 | 729 | putative beta-galactosidase [Arabidopsis thaliana] |
| RefSeq | NP_190852.2 | 0 | 1 | 722 | 28 | 727 | BGAL2 (beta-galactosidase 2); beta-galactosidase/ catalytic/ cation binding [Arabidopsis thaliana] |
| RefSeq | NP_849553.1 | 0 | 1 | 722 | 28 | 728 | BGAL12 (beta-galactosidase 12); beta-galactosidase/ catalytic/ cation binding [Arabidopsis thaliana] |
| Swiss-Prot | Q9LFA6 | 0 | 1 | 722 | 28 | 727 | BGAL2_ARATH RecName: Full=Beta-galactosidase 2; Short=Lactase 2; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 4e-39 | 11 | 329 | 17 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_B | 6e-35 | 11 | 318 | 12 | 315 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_B | 0.0005 | 464 | 729 | 385 | 595 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_A | 6e-35 | 11 | 318 | 12 | 315 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| HO778160 | 729 | 2 | 726 | 0 |
| HO780602 | 674 | 52 | 720 | 0 |
| HO795552 | 525 | 112 | 635 | 0 |
| HO795552 | 52 | 2 | 53 | 2e-39 |
| HO795552 | 41 | 53 | 93 | 2e-39 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |