| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra013972 |
| Family | GH5 |
| Protein Properties | Length: 523 Molecular Weight: 58907.8 Isoelectric Point: 8.2885 |
| Chromosome | Chromosome/Scaffold: 08 Start: 4917375 End: 4920313 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 36 | 345 | 1.8e-37 |
| IVNKSGHRVKLACVNWPSHLKPVVAEGLSSQPMDSISKKIKEMGFNCVRLTWPLELMINDTLAFNVTVKQSFERYGLDHELQGIYTHNPSIVNTPLINAV VYSLGRNDVMVILDNHKTVPGWCCSNDDPDAFFGDPKFNPDLWMLGLKKMATIFMDVNNVIGMSLRNELRGYNHTAKDWYMQRGAEAVHGSNPNVLVILS GLDFDADLTFLKDRPVNLSFKKKLVLELHWYAFTNGTGQWKSHNVNDFCSQIFTKEHRTGGFLLDQGFPLFLSEFGTDQRGGDFEGNRYMSCMLAWAAEK DIDWAVWALT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 523 Download |
| MAKTIFPLTL LLSLLLSSIS LTLAADYPLS TKSRWIVNKS GHRVKLACVN WPSHLKPVVA 60 EGLSSQPMDS ISKKIKEMGF NCVRLTWPLE LMINDTLAFN VTVKQSFERY GLDHELQGIY 120 THNPSIVNTP LINAVVYSLG RNDVMVILDN HKTVPGWCCS NDDPDAFFGD PKFNPDLWML 180 GLKKMATIFM DVNNVIGMSL RNELRGYNHT AKDWYMQRGA EAVHGSNPNV LVILSGLDFD 240 ADLTFLKDRP VNLSFKKKLV LELHWYAFTN GTGQWKSHNV NDFCSQIFTK EHRTGGFLLD 300 QGFPLFLSEF GTDQRGGDFE GNRYMSCMLA WAAEKDIDWA VWALTGVYYF REGKRGVVEA 360 YGMLDANWHH VHNHTYLQRL SVIQPPHKGP GIKHNHHKKI FHPLTGLCLV RKSPCYESEL 420 TLGPCTKDEP WSYSHGDRLE IKGGHKSCVE GETSVGRSVK LGKKCTKIKR ISATKMHLAF 480 KNNDGLLVCL DVDSDNNIVA NHCKCLTGDI SCEPASQWFK IF* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG2730 | BglC | 0.006 | 42 | 346 | 343 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
| pfam00150 | Cellulase | 9.0e-18 | 67 | 346 | 290 | + Cellulase (glycosyl hydrolase family 5). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD31066.1 | 0 | 27 | 522 | 3 | 503 | AC007357_15 F3F19.15 [Arabidopsis thaliana] |
| RefSeq | NP_172772.2 | 0 | 27 | 522 | 33 | 533 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_197172.1 | 0 | 1 | 522 | 1 | 488 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_197252.1 | 0 | 26 | 522 | 25 | 526 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002312657.1 | 0 | 28 | 521 | 11 | 508 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1vrx_B | 0.00000000000006 | 31 | 312 | 8 | 285 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1vrx_A | 0.00000000000006 | 31 | 312 | 8 | 285 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1ece_B | 0.0000000000007 | 31 | 312 | 8 | 285 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 1ece_A | 0.0000000000007 | 31 | 312 | 8 | 285 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 2zun_C | 0.000004 | 44 | 343 | 61 | 378 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
