PlantCAZyme

Basic Information
Species	Brassica rapa
Cazyme ID	Bra014036
Family	GH35
Protein Properties	Length: 713 Molecular Weight: 78991.4 Isoelectric Point: 7.877
Chromosome	Chromosome/Scaffold: 08 Start: 4271013 End: 4274407
Description	beta-galactosidase 5
View CDS

External Links
NCBI Taxonomy
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH35	20	320	0
VVNGHRRILLSGSIHYPRSTPEMWEDLIKKAKDGGLDVIDTYVFWNGHEPSPGIYNFEGRYDLVRFIKTVQEVGLYVHLRIGPYVCAEWNFGGFPVWLKY VPGISFRTDNGPFKDAMQGFTYKIVQMMKDHQFFASQGGPIILSQIENEFGPILKGSSDHSYVNWAVKMAVGLNTGVPWVMCKEDDAPDPIINTCNGFYC DHFTPNKPYKPTMWTEAWTGWFTLFGGTIRKRPVEDLAFGVTRFIQNGGSYINYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLVQEPKYSHLKQLH Q

Full Sequence
Protein Sequence Length: 713 Download
MLIGSSIIQC SVTYDKKAIV VNGHRRILLS GSIHYPRSTP EMWEDLIKKA KDGGLDVIDT 60 YVFWNGHEPS PGIYNFEGRY DLVRFIKTVQ EVGLYVHLRI GPYVCAEWNF GGFPVWLKYV 120 PGISFRTDNG PFKDAMQGFT YKIVQMMKDH QFFASQGGPI ILSQIENEFG PILKGSSDHS 180 YVNWAVKMAV GLNTGVPWVM CKEDDAPDPI INTCNGFYCD HFTPNKPYKP TMWTEAWTGW 240 FTLFGGTIRK RPVEDLAFGV TRFIQNGGSY INYYMYHGGT NFGRTAGGPF ITTSYDYDAP 300 IDEYGLVQEP KYSHLKQLHQ AIKQCESALV SSDATVTKLG RYGEAHVFSA GKGSCAAFLS 360 NYHMNAPAKV VFNKRQYTLP AWSTSILPDC ENVVYNTATV VAKTSNVEMV PSGSVVYSVA 420 RYDEDIATYG DRGTITALGL LDQINVTRDT NDYLWYITSV DIKESESFLR GGKWPTLTVD 480 SAGHAVHVFV NGHFYGSAFG TRENRKVSFS APVNLRGGAN RVALLSVAVG LPNDGPHFET 540 WATGVVGSVA LHGLDEGNKD LSRQKWTYQV GLRGEALNLI SPTEASSVDW IKGSLAKQNK 600 QPLTWYKAYF DTPRGNEPLA LDLESMGKGQ AWINGESLGR YWTAIAKGNC GSCNYAGAYR 660 QANCQSGCGE PTQRWYHVPR SWLKPRGNLL VLFEELGGDI SKVSVVKRSS VP* 720

Full Sequence

Protein Sequence Length: 713 Download

MLIGSSIIQC SVTYDKKAIV VNGHRRILLS GSIHYPRSTP EMWEDLIKKA KDGGLDVIDT    60
YVFWNGHEPS PGIYNFEGRY DLVRFIKTVQ EVGLYVHLRI GPYVCAEWNF GGFPVWLKYV    120
PGISFRTDNG PFKDAMQGFT YKIVQMMKDH QFFASQGGPI ILSQIENEFG PILKGSSDHS    180
YVNWAVKMAV GLNTGVPWVM CKEDDAPDPI INTCNGFYCD HFTPNKPYKP TMWTEAWTGW    240
FTLFGGTIRK RPVEDLAFGV TRFIQNGGSY INYYMYHGGT NFGRTAGGPF ITTSYDYDAP    300
IDEYGLVQEP KYSHLKQLHQ AIKQCESALV SSDATVTKLG RYGEAHVFSA GKGSCAAFLS    360
NYHMNAPAKV VFNKRQYTLP AWSTSILPDC ENVVYNTATV VAKTSNVEMV PSGSVVYSVA    420
RYDEDIATYG DRGTITALGL LDQINVTRDT NDYLWYITSV DIKESESFLR GGKWPTLTVD    480
SAGHAVHVFV NGHFYGSAFG TRENRKVSFS APVNLRGGAN RVALLSVAVG LPNDGPHFET    540
WATGVVGSVA LHGLDEGNKD LSRQKWTYQV GLRGEALNLI SPTEASSVDW IKGSLAKQNK    600
QPLTWYKAYF DTPRGNEPLA LDLESMGKGQ AWINGESLGR YWTAIAKGNC GSCNYAGAYR    660
QANCQSGCGE PTQRWYHVPR SWLKPRGNLL VLFEELGGDI SKVSVVKRSS VP*           720

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
pfam02449	Glyco_hydro_42	3.0e-6	34	170	152	+ Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.
COG1874	LacA	1.0e-20	12	313	347	+ Beta-galactosidase [Carbohydrate transport and metabolism]
pfam01301	Glyco_hydro_35	1.0e-159	18	322	325	+ Glycosyl hydrolases family 35.
PLN03059	PLN03059	0	6	699	697	+ beta-galactosidase; Provisional

Gene Ontology
GO Term	Description
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004565	beta-galactosidase activity
GO:0005975	carbohydrate metabolic process
GO:0009341	beta-galactosidase complex

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	AAL24206.1	0	1	709	19	730	At1g45130/F27F5_20 [Arabidopsis thaliana]
EMBL	CAB64741.1	0	1	709	19	730	putative beta-galactosidase [Arabidopsis thaliana]
RefSeq	NP_175127.1	0	1	709	19	730	BGAL5 (beta-galactosidase 5); beta-galactosidase/ catalytic/ cation binding [Arabidopsis thaliana]
RefSeq	XP_002306893.1	0	1	711	17	728	predicted protein [Populus trichocarpa]
RefSeq	XP_002510455.1	0	1	709	17	726	beta-galactosidase, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	3d3a_A	0	6	318	2	325	A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron
PDB	3thd_D	6e-40	11	392	10	405	A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron
PDB	3thd_C	6e-40	11	392	10	405	A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron

Metabolic Pathways
Pathway Name	Reaction	EC	Protein Name
lactose degradation III	BETAGALACTOSID-RXN	EC-3.2.1.23	β-galactosidase

EST Download unfiltered results here

Hit	Length	Start	End	EValue
HO778160	701	1	699	0
HO780602	606	62	664	0
HO795552	526	102	625	0
HO795552	56	8	63	3e-34
HO780602	34	664	697	0.000003

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_001_00780.9	Aquca_001_00780.8	Aquca_001_00780.7	Aquca_001_00780.6	Aquca_001_00780.5
	Aquca_001_00780.4	Aquca_001_00780.3	Aquca_001_00780.2	Aquca_001_00780.1	Aquca_034_00110.4
	Aquca_034_00110.3	Aquca_034_00110.1	Aquca_020_00465.4	Aquca_020_00465.3	Aquca_020_00465.2
	Aquca_020_00465.1	Aquca_010_00597.2	Aquca_010_00597.1	Aquca_001_00069.5	Aquca_001_00069.4
	Aquca_001_00069.3	Aquca_001_00069.2	Aquca_001_00069.1	Aquca_007_00320.5	Aquca_007_00320.4
	Aquca_007_00320.3	Aquca_007_00320.2	Aquca_007_00320.1	Aquca_014_00261.6	Aquca_014_00261.5
	Aquca_014_00261.3	Aquca_014_00261.1	Aquca_076_00042.1	Aquca_014_00261.2
Arabidopsis lyrata	481656	902346	897617	491000	485655
	313754	351167	492198	473836	885868
	919677
Arabidopsis thaliana	AT2G28470.2	AT2G28470.1	AT2G32810.2	AT2G32810.1	AT3G13750.1
	AT4G36360.2	AT4G36360.1	AT3G52840.1	AT1G45130.1	AT5G20710.1
	AT4G26140.2	AT4G26140.1	AT1G31740.1	AT5G56870.1	AT5G63810.1
Brachypodium distachyon	Bradi1g67760.1	Bradi4g07990.3	Bradi4g07990.2	Bradi4g07990.1	Bradi3g08180.1
	Bradi1g74050.1	Bradi1g37450.1	Bradi2g41830.1	Bradi2g56607.1	Bradi2g40450.1
	Bradi3g49460.1
Brassica rapa	Bra011946	Bra000493	Bra021814	Bra027403	Bra011677
	Bra036334	Bra002325	Bra006850	Bra021506	Bra019644
	Bra035634	Bra019120	Bra024238
Carica papaya	evm.model.supercontig_216.21	evm.model.supercontig_25.57	evm.model.supercontig_93.34	evm.TU.contig_32583.1	evm.model.supercontig_6.189
	evm.model.supercontig_28.1	evm.model.supercontig_99.11	evm.model.supercontig_24.26	evm.model.supercontig_28.48	evm.model.supercontig_18.155
	evm.model.supercontig_37.20
Capsella rubella	Carubv10025350m	Carubv10025536m	Carubv10011312m	Carubv10016323m	Carubv10004155m
	Carubv10004117m	Carubv10008424m	Carubv10007108m	Carubv10003630m	Carubv10025963m
	Carubv10025947m
Citrus clementina	Ciclev10027805m	Ciclev10004268m	Ciclev10024888m	Ciclev10024886m	Ciclev10000260m
	Ciclev10017808m	Ciclev10024881m	Ciclev10007628m	Ciclev10007573m	Ciclev10007531m
	Ciclev10010771m	Ciclev10010541m	Ciclev10030257m	Ciclev10010454m	Ciclev10010258m
	Ciclev10000393m	Ciclev10018839m
Citrus sinensis	orange1.1g009890m	orange1.1g006249m	orange1.1g003147m	orange1.1g003095m	orange1.1g038226m
	orange1.1g005416m	orange1.1g003498m	orange1.1g003137m	orange1.1g002867m	orange1.1g006635m
	orange1.1g004777m	orange1.1g003649m	orange1.1g003585m	orange1.1g003076m	orange1.1g037925m
	orange1.1g006904m	orange1.1g003490m	orange1.1g003044m	orange1.1g007390m	orange1.1g007388m
	orange1.1g006681m	orange1.1g006349m	orange1.1g005319m	orange1.1g005182m	orange1.1g004677m
	orange1.1g004219m	orange1.1g039348m	orange1.1g046585m	orange1.1g005160m	orange1.1g005690m
	orange1.1g037832m	orange1.1g004525m	orange1.1g036343m	orange1.1g045354m	orange1.1g004605m
	orange1.1g046146m
Cucumis sativus	Cucsa.256570.1	Cucsa.207240.3	Cucsa.207240.2	Cucsa.207240.1	Cucsa.043260.3
	Cucsa.043260.1	Cucsa.397370.7	Cucsa.397370.6	Cucsa.397370.4	Cucsa.397370.3
	Cucsa.397370.2	Cucsa.201100.1	Cucsa.229010.3	Cucsa.229010.1	Cucsa.397370.5
	Cucsa.397380.7	Cucsa.397380.4	Cucsa.397380.3	Cucsa.397380.2	Cucsa.397380.1
	Cucsa.014950.1	Cucsa.228210.1	Cucsa.182050.1	Cucsa.342700.5	Cucsa.342700.3
	Cucsa.342700.2	Cucsa.342700.1	Cucsa.356120.1	Cucsa.254230.1	Cucsa.397400.1
	Cucsa.043260.2	Cucsa.141960.1	Cucsa.109300.1	Cucsa.397370.1	Cucsa.128820.1
Eucalyptus grandis	Eucgr.J00936.1	Eucgr.F01855.1	Eucgr.H00038.1	Eucgr.D00703.2	Eucgr.D00703.1
	Eucgr.C00898.2	Eucgr.C00898.1	Eucgr.I02384.1	Eucgr.C03662.1	Eucgr.G01704.2
	Eucgr.G01704.1	Eucgr.F03130.2	Eucgr.F03130.1	Eucgr.J02867.4	Eucgr.J02867.3
	Eucgr.J02867.2	Eucgr.J02867.1	Eucgr.C03896.1	Eucgr.A01583.1	Eucgr.C03897.1
	Eucgr.I00108.1	Eucgr.C03898.1	Eucgr.C00782.1
Fragaria vesca	mrna04817.1-v1.0-hybrid	mrna14907.1-v1.0-hybrid	mrna23065.1-v1.0-hybrid	mrna21868.1-v1.0-hybrid	mrna12627.1-v1.0-hybrid
	mrna12626.1-v1.0-hybrid	mrna30476.1-v1.0-hybrid	mrna12914.1-v1.0-hybrid	mrna24562.1-v1.0-hybrid	mrna12920.1-v1.0-hybrid
Glycine max	Glyma08g11670.1	Glyma13g40200.2	Glyma13g40200.1	Glyma11g20730.1	Glyma12g29660.1
	Glyma11g16010.1	Glyma08g20650.1	Glyma15g02750.1	Glyma07g01250.1	Glyma13g42680.1
	Glyma04g03120.1	Glyma01g37541.1	Glyma11g07760.1	Glyma14g07700.1	Glyma17g37270.3
	Glyma17g37270.2	Glyma02g05790.1	Glyma02g07770.1	Glyma16g24440.1	Glyma02g07740.1
	Glyma13g17240.1	Glyma17g06280.1	Glyma09g07100.1	Glyma09g21970.1	Glyma15g18430.5
	Glyma15g18430.4	Glyma15g18430.2	Glyma17g05250.1	Glyma16g09490.1	Glyma07g12010.1
	Glyma07g12060.1	Glyma04g38590.1	Glyma06g16420.2	Glyma06g03160.1	Glyma16g05320.2
Gossypium raimondii	Gorai.009G078400.2	Gorai.009G078400.1	Gorai.011G155500.3	Gorai.011G155500.2	Gorai.011G155500.1
	Gorai.009G140800.1	Gorai.001G011600.3	Gorai.001G011600.2	Gorai.001G011600.1	Gorai.010G007300.4
	Gorai.010G007300.3	Gorai.010G007300.2	Gorai.010G007300.1	Gorai.009G198100.2	Gorai.009G198100.1
	Gorai.011G065300.3	Gorai.011G065300.2	Gorai.011G065300.1	Gorai.003G011900.1	Gorai.010G082900.7
	Gorai.010G082900.6	Gorai.010G082900.5	Gorai.010G082900.4	Gorai.010G082900.3	Gorai.010G082900.2
	Gorai.010G082900.1	Gorai.011G021800.1	Gorai.007G198900.7	Gorai.007G198900.6	Gorai.007G198900.5
	Gorai.007G198900.4	Gorai.007G198900.3	Gorai.007G198900.2	Gorai.007G198900.1	Gorai.005G246600.4
	Gorai.005G246600.3	Gorai.005G246600.2	Gorai.005G246600.1	Gorai.008G000600.3	Gorai.008G000600.2
	Gorai.008G000600.1	Gorai.009G140800.2	Gorai.013G222800.1	Gorai.011G065300.4	Gorai.003G059500.1
	Gorai.013G216400.1	Gorai.013G261500.1	Gorai.008G221000.1
Linum usitatissimum	Lus10016655	Lus10015625	Lus10037644	Lus10000701	Lus10025980
	Lus10024292	Lus10041798	Lus10028348	Lus10040557	Lus10006009
	Lus10028848	Lus10008974.310.612	Lus10008974.310.612	Lus10008974.310.612	Lus10006733
	Lus10000803	Lus10014278	Lus10022645	Lus10003343	Lus10025108.641.935
	Lus10025108.641.935	Lus10025108.641.935
Malus domestica	MDP0000271897	MDP0000265046	MDP0000030527	MDP0000151981	MDP0000416548
	MDP0000188563	MDP0000899966	MDP0000310582	MDP0000227393	MDP0000201058
	MDP0000195063	MDP0000133794	MDP0000180588	MDP0000202465
Manihot esculenta	cassava4.1_031695m	cassava4.1_001639m	cassava4.1_001637m	cassava4.1_001503m	cassava4.1_021365m
	cassava4.1_001635m	cassava4.1_001624m	cassava4.1_001621m	cassava4.1_003430m	cassava4.1_001885m
	cassava4.1_001652m	cassava4.1_002442m	cassava4.1_031472m	cassava4.1_021879m	cassava4.1_023022m
	cassava4.1_001733m	cassava4.1_029381m	cassava4.1_025948m
Medicago truncatula	Medtr2g094060.1	Medtr2g094070.1	Medtr4g059680.1	Medtr8g085210.1	Medtr2g100110.1
	Medtr2g094020.1	Medtr1g023120.1	Medtr5g021190.1	Medtr2g039120.2	Medtr2g039120.1
	Medtr5g024080.1	Medtr2g042610.1	Medtr3g005570.1	Medtr1g018200.1	Medtr3g096900.2
	Medtr3g096900.1	Medtr5g025830.1
Mimulus guttatus	mgv1a001399m	mgv1a001263m	mgv1a001990m	mgv1a001293m	mgv1a001258m
	mgv1a001958m	mgv1a001956m	mgv1a001295m	mgv1a003101m	mgv1a001274m
	mgv1a001299m	mgv1a024117m	mgv1a001416m	mgv1a026608m	mgv1a001605m
	mgv1a001631m	mgv1a001413m	mgv1a001532m
Oryza sativa	LOC_Os03g15020.1	LOC_Os12g24170.1	LOC_Os06g37560.1	LOC_Os02g12730.3	LOC_Os02g12730.2
	LOC_Os02g12730.1	LOC_Os03g06940.2	LOC_Os03g06940.1	LOC_Os01g39830.1	LOC_Os03g15020.2
	LOC_Os01g65460.2	LOC_Os01g65460.1	LOC_Os01g34920.1	LOC_Os10g18400.1	LOC_Os10g19960.1
	LOC_Os06g42310.1
Panicum virgatum	Pavirv00010319m	Pavirv00012002m	Pavirv00013315m	Pavirv00037614m	Pavirv00065729m
	Pavirv00038061m	Pavirv00063900m	Pavirv00063103m	Pavirv00033311m
Physcomitrella patens	Pp1s10_144V6.1	Pp1s24_113V6.1	Pp1s189_71V6.1	Pp1s189_65V6.1
Phaseolus vulgaris	Phvul.004G096800.1	Phvul.003G050100.1	Phvul.011G077600.1	Phvul.011G074300.1	Phvul.011G074900.1
	Phvul.009G012700.1	Phvul.005G160000.1	Phvul.010G139300.1	Phvul.002G167200.1	Phvul.003G258300.1
	Phvul.001G010900.1	Phvul.009G232500.1	Phvul.003G137000.1	Phvul.009G153100.1	Phvul.011G075900.1
Picea abies	MA_72251g0010	MA_98513g0010	MA_10427427g0010	MA_10428400g0010
Populus trichocarpa	Potri.009G012400.6	Potri.009G012400.5	Potri.009G012400.4	Potri.009G012400.3	Potri.009G012400.2
	Potri.009G012400.1	Potri.017G057900.1	Potri.005G232600.1	Potri.001G200400.3	Potri.001G200400.1
	Potri.006G144500.5	Potri.006G144500.4	Potri.006G144500.3	Potri.006G144500.2	Potri.006G144500.1
	Potri.003G038500.4	Potri.003G038500.3	Potri.003G038500.2	Potri.003G038500.1	Potri.007G018100.7
	Potri.007G018100.6	Potri.007G018100.5	Potri.007G018100.4	Potri.007G018100.2	Potri.007G018100.1
	Potri.004G159800.1	Potri.011G044300.2	Potri.011G044300.1	Potri.006G139100.3	Potri.001G025700.1
	Potri.001G025800.1	Potri.T154000.1	Potri.006G139100.1	Potri.018G062800.1	Potri.007G099800.1
	Potri.001G200400.2	Potri.004G159800.2	Potri.006G139100.2	Potri.007G099800.2
Prunus persica	ppa001149m	ppa002271m	ppa001412m	ppa001334m	ppa001382m
	ppa001415m	ppa001340m	ppa001363m	ppa001345m	ppa020752m
	ppa001480m	ppa001479m
Ricinus communis	28076.m000428	29904.m002899	29739.m003720	30170.m014108	28694.m000675
	29917.m001961	29739.m003740	30131.m007094	29912.m005323	30193.m000718
	29912.m005324	29815.m000493
Setaria italica	Si021080m	Si034234m	Si034250m	Si034249m	Si000317m
	Si000291m	Si016472m
Selaginella moellendorffii	269483	404798	413650
Sorghum bicolor	Sb08g004410.1	Sb01g040750.1	Sb04g007660.1	Sb10g022620.1	Sb01g046160.1
	Sb03g025990.1	Sb03g041450.1	Sb03g023500.1
Thellungiella halophila	Thhalv10016234m	Thhalv10016215m	Thhalv10020056m	Thhalv10024679m	Thhalv10024387m
	Thhalv10006871m	Thhalv10011265m	Thhalv10024511m	Thhalv10012695m	Thhalv10012847m
	Thhalv10010152m	Thhalv10003705m
Vitis vinifera	GSVIVT01020995001	GSVIVT01025170001	GSVIVT01016849001	GSVIVT01018853001	GSVIVT01009791001
	GSVIVT01024221001	GSVIVT01015203001	GSVIVT01015038001	GSVIVT01022339001	GSVIVT01033736001

CAZyme Information