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Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra014036 |
Family | GH35 |
Protein Properties | Length: 713 Molecular Weight: 78991.4 Isoelectric Point: 7.877 |
Chromosome | Chromosome/Scaffold: 08 Start: 4271013 End: 4274407 |
Description | beta-galactosidase 5 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 20 | 320 | 0 |
VVNGHRRILLSGSIHYPRSTPEMWEDLIKKAKDGGLDVIDTYVFWNGHEPSPGIYNFEGRYDLVRFIKTVQEVGLYVHLRIGPYVCAEWNFGGFPVWLKY VPGISFRTDNGPFKDAMQGFTYKIVQMMKDHQFFASQGGPIILSQIENEFGPILKGSSDHSYVNWAVKMAVGLNTGVPWVMCKEDDAPDPIINTCNGFYC DHFTPNKPYKPTMWTEAWTGWFTLFGGTIRKRPVEDLAFGVTRFIQNGGSYINYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLVQEPKYSHLKQLH Q |
Full Sequence |
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Protein Sequence Length: 713 Download |
MLIGSSIIQC SVTYDKKAIV VNGHRRILLS GSIHYPRSTP EMWEDLIKKA KDGGLDVIDT 60 YVFWNGHEPS PGIYNFEGRY DLVRFIKTVQ EVGLYVHLRI GPYVCAEWNF GGFPVWLKYV 120 PGISFRTDNG PFKDAMQGFT YKIVQMMKDH QFFASQGGPI ILSQIENEFG PILKGSSDHS 180 YVNWAVKMAV GLNTGVPWVM CKEDDAPDPI INTCNGFYCD HFTPNKPYKP TMWTEAWTGW 240 FTLFGGTIRK RPVEDLAFGV TRFIQNGGSY INYYMYHGGT NFGRTAGGPF ITTSYDYDAP 300 IDEYGLVQEP KYSHLKQLHQ AIKQCESALV SSDATVTKLG RYGEAHVFSA GKGSCAAFLS 360 NYHMNAPAKV VFNKRQYTLP AWSTSILPDC ENVVYNTATV VAKTSNVEMV PSGSVVYSVA 420 RYDEDIATYG DRGTITALGL LDQINVTRDT NDYLWYITSV DIKESESFLR GGKWPTLTVD 480 SAGHAVHVFV NGHFYGSAFG TRENRKVSFS APVNLRGGAN RVALLSVAVG LPNDGPHFET 540 WATGVVGSVA LHGLDEGNKD LSRQKWTYQV GLRGEALNLI SPTEASSVDW IKGSLAKQNK 600 QPLTWYKAYF DTPRGNEPLA LDLESMGKGQ AWINGESLGR YWTAIAKGNC GSCNYAGAYR 660 QANCQSGCGE PTQRWYHVPR SWLKPRGNLL VLFEELGGDI SKVSVVKRSS VP* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02449 | Glyco_hydro_42 | 3.0e-6 | 34 | 170 | 152 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
COG1874 | LacA | 1.0e-20 | 12 | 313 | 347 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam01301 | Glyco_hydro_35 | 1.0e-159 | 18 | 322 | 325 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 6 | 699 | 697 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0004565 | beta-galactosidase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0009341 | beta-galactosidase complex |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL24206.1 | 0 | 1 | 709 | 19 | 730 | At1g45130/F27F5_20 [Arabidopsis thaliana] |
EMBL | CAB64741.1 | 0 | 1 | 709 | 19 | 730 | putative beta-galactosidase [Arabidopsis thaliana] |
RefSeq | NP_175127.1 | 0 | 1 | 709 | 19 | 730 | BGAL5 (beta-galactosidase 5); beta-galactosidase/ catalytic/ cation binding [Arabidopsis thaliana] |
RefSeq | XP_002306893.1 | 0 | 1 | 711 | 17 | 728 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002510455.1 | 0 | 1 | 709 | 17 | 726 | beta-galactosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 0 | 6 | 318 | 2 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 6e-40 | 11 | 392 | 10 | 405 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 6e-40 | 11 | 392 | 10 | 405 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778160 | 701 | 1 | 699 | 0 |
HO780602 | 606 | 62 | 664 | 0 |
HO795552 | 526 | 102 | 625 | 0 |
HO795552 | 56 | 8 | 63 | 3e-34 |
HO780602 | 34 | 664 | 697 | 0.000003 |
Sequence Alignments (This image is cropped. Click for full image.) |
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