| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra014082 |
| Family | CBM43 |
| Protein Properties | Length: 211 Molecular Weight: 23339.4 Isoelectric Point: 6.0065 |
| Chromosome | Chromosome/Scaffold: 08 Start: 3671189 End: 3677587 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 124 | 205 | 6.7e-31 |
| WCVAKPATKKEKLQQIIDFACSKVNCAAISNGGACYSPEDLLLHASVAMNNYYQAEGRHFWNCNFAGSGIIAITDPSTGNCK | |||
| Full Sequence |
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| Protein Sequence Length: 211 Download |
| MMFSNTDTKL PVMDIITAYN EETQSIHRDT TFCVSVFDSL AMQLNAKKFG NDVAFFLTLP 60 SEPIFYFDSE RTAGDSYVKG MLDGEANQTA VRKLIQKCYM EDSSSRSLEG TFTRVNAEGH 120 HGEWCVAKPA TKKEKLQQII DFACSKVNCA AISNGGACYS PEDLLLHASV AMNNYYQAEG 180 RHFWNCNFAG SGIIAITDPS TGNCKYQLKK * 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 5.0e-17 | 124 | 193 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-33 | 124 | 206 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB64039.1 | 7e-36 | 109 | 200 | 19 | 111 | putative beta-1,3-glucanase, C terminal fragment [Arabidopsis thaliana] |
| GenBank | AAT41831.1 | 3e-40 | 109 | 210 | 18 | 120 | At2g43670 [Arabidopsis thaliana] |
| GenBank | ACF84562.1 | 7e-28 | 120 | 206 | 32 | 120 | unknown [Zea mays] |
| RefSeq | NP_177973.4 | 3e-31 | 109 | 207 | 19 | 115 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_181895.2 | 3e-40 | 109 | 210 | 19 | 121 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 2e-19 | 122 | 206 | 11 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| BX838390 | 104 | 109 | 211 | 1e-39 |
| EE657217 | 99 | 116 | 211 | 2e-32 |
| ES960417 | 98 | 112 | 209 | 3e-32 |
| CN732365 | 98 | 112 | 209 | 4e-32 |
| DY003852 | 98 | 112 | 209 | 5e-32 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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