y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra014410 |
Family | CE8 |
Protein Properties | Length: 576 Molecular Weight: 62138 Isoelectric Point: 8.3646 |
Chromosome | Chromosome/Scaffold: 04 Start: 371068 End: 372971 |
Description | VANGUARD 1 homolog 2 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 266 | 558 | 0 |
VVAKDGSGNFKTIYEAVNACPEKNNGRCIIHIKAGVYKEMVRIPKKNNNIFMFGDGATKTIITFDKSVALSKTTTSLSATVQVESEGFMAKWIGFQNTAG PLGHQAVAFRVNGDRAVIFNCRFDAFQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILIRKGSQGQAHYVTADGNEKGAAVKIGIVLQNCRIM ADKDLEAEKLTTKSYLGRPWKKFSTTVIIGTEISDVIKPEGWSEWKGEANHKTAKYIEFNNRGPGANTAARVPWAKIAKSAAEVEGFTVAKWL |
Full Sequence |
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Protein Sequence Length: 576 Download |
MAVGKIVISV ASILLVVGVA IGVVTFVHKG GDAGGEKTLN SHQKAVQTIC QTTTDQGSCA 60 KTLEPVKSDD PSKLIKAFML ATKDAITRSS NFTATTEEGL GKNMNETSKA VLEYCKRVLT 120 YALEDLETIV EEMGEDLQQS GSKIDQLKQW LTGVFNYQTD CLDDIEEEEL RKIMGEGISN 180 SKVLTSNAID IFHSVVTAMS QMGVKVDDMG GTGAPGRRLL EDIDAKGLPT WLSGKDRKLM 240 AQVGRGGDDG IGEGGGGGGK IKATHVVAKD GSGNFKTIYE AVNACPEKNN GRCIIHIKAG 300 VYKEMVRIPK KNNNIFMFGD GATKTIITFD KSVALSKTTT SLSATVQVES EGFMAKWIGF 360 QNTAGPLGHQ AVAFRVNGDR AVIFNCRFDA FQDTLYVNNG RQFYRNIVVS GTVDFIFGKS 420 ATVIQNSLIL IRKGSQGQAH YVTADGNEKG AAVKIGIVLQ NCRIMADKDL EAEKLTTKSY 480 LGRPWKKFST TVIIGTEISD VIKPEGWSEW KGEANHKTAK YIEFNNRGPG ANTAARVPWA 540 KIAKSAAEVE GFTVAKWLTP VNWIQEANVP VQLGL* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 1.0e-108 | 25 | 575 | 555 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02990 | PLN02990 | 9.0e-111 | 44 | 570 | 536 | + Probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 2.0e-131 | 266 | 558 | 299 | + Pectinesterase. | ||
PLN02745 | PLN02745 | 1.0e-136 | 36 | 575 | 553 | + Putative pectinesterase/pectinesterase inhibitor | ||
PLN02197 | PLN02197 | 0 | 25 | 575 | 573 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAV91510.1 | 0 | 1 | 575 | 1 | 588 | VGD1-like protein 2 [Arabidopsis thaliana] |
GenBank | ABC25451.1 | 0 | 1 | 575 | 1 | 585 | pollen development related protein [Brassica rapa subsp. chinensis] |
RefSeq | NP_191776.1 | 0 | 1 | 575 | 1 | 588 | VGDH2 (Vanguard 1 homolog 2); enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
Swiss-Prot | P41510 | 0 | 1 | 575 | 1 | 584 | PME_BRANA RecName: Full=Probable pectinesterase/pectinesterase inhibitor; Includes: RecName: Full=Pectinesterase inhibitor; AltName: Full=Pectin methylesterase inhibitor; Includes: RecName: Full=Pectinesterase; Short=PE; AltName: Full=Pectin methylesterase; Flags: Precursor |
Swiss-Prot | Q42608 | 0 | 14 | 575 | 1 | 571 | PME_BRACM RecName: Full=Pectinesterase/pectinesterase inhibitor; Includes: RecName: Full=Pectinesterase inhibitor; AltName: Full=Pectin methylesterase inhibitor; Includes: RecName: Full=Pectinesterase; Short=PE; AltName: Full=Pectin methylesterase |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 266 | 575 | 10 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 261 | 575 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 8e-19 | 266 | 561 | 7 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 8e-19 | 266 | 561 | 7 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 8e-19 | 266 | 561 | 7 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |