| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra014550 |
| Family | CE8 |
| Protein Properties | Length: 365 Molecular Weight: 38995.6 Isoelectric Point: 9.1859 |
| Chromosome | Chromosome/Scaffold: 04 Start: 1385180 End: 1387056 |
| Description | pectin methylesterase 61 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 63 | 347 | 0 |
| AVVAADGSGTHMSVGEALASLEKGTGGRSVIHLTAGTYKENLNIPTKQKNVMLVGDGKGKTVIVGSRSNKGGYNTYQTATVAAMGDGFIARDITFVNSAG PNAEQAVALRVGSDRSVVYRCSIDAYQDTLYTLSKRQFYRETDITGTVDFIFGNSAVVFQSCNIASRKGSSDQNYVTAQGRSDPNQNTGIAIHNCRITGS TRTYLGRPWKEYSRTVVMQSFLDGSVHPSGWSPWSSSFALKTLYYGEFGNSGPGSSVSGRVSWPGYHPALTLTEAQGFTVSGFIG | |||
| Full Sequence |
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| Protein Sequence Length: 365 Download |
| MDSVVSNLTG LLTNSLEMFV SGKPTRRETG GRKLLSGQDF PTWVSLSDRR LLEASVEELR 60 PHAVVAADGS GTHMSVGEAL ASLEKGTGGR SVIHLTAGTY KENLNIPTKQ KNVMLVGDGK 120 GKTVIVGSRS NKGGYNTYQT ATVAAMGDGF IARDITFVNS AGPNAEQAVA LRVGSDRSVV 180 YRCSIDAYQD TLYTLSKRQF YRETDITGTV DFIFGNSAVV FQSCNIASRK GSSDQNYVTA 240 QGRSDPNQNT GIAIHNCRIT GSTRTYLGRP WKEYSRTVVM QSFLDGSVHP SGWSPWSSSF 300 ALKTLYYGEF GNSGPGSSVS GRVSWPGYHP ALTLTEAQGF TVSGFIGGTS WLPSTGVVFD 360 SGLL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 3.0e-125 | 1 | 363 | 385 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 8.0e-126 | 32 | 363 | 343 | + pectinesterase | ||
| PLN02301 | PLN02301 | 3.0e-141 | 15 | 363 | 359 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 3.0e-167 | 62 | 348 | 297 | + Pectinesterase. | ||
| PLN02170 | PLN02170 | 0 | 1 | 364 | 367 | + probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK69695.1 | 0 | 1 | 364 | 159 | 549 | putative pectin methylesterase LuPME1 [Linum usitatissimum] |
| EMBL | CBI39447.1 | 0 | 24 | 364 | 90 | 431 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_181833.1 | 0 | 1 | 364 | 155 | 517 | ATPMEPCRD; enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_191460.1 | 0 | 1 | 364 | 163 | 529 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002527752.1 | 0 | 1 | 364 | 208 | 582 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 62 | 363 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 61 | 363 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_B | 4e-16 | 62 | 354 | 5 | 340 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_A | 4e-16 | 62 | 354 | 5 | 340 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntp_B | 4e-16 | 62 | 354 | 5 | 340 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FY433569 | 292 | 54 | 345 | 0 |
| EX748654 | 220 | 66 | 285 | 0 |
| FG565507 | 246 | 53 | 296 | 0 |
| DK526341 | 240 | 126 | 365 | 0 |
| EH422779 | 194 | 1 | 194 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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