| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra014620 |
| Family | GH28 |
| Protein Properties | Length: 459 Molecular Weight: 50230.3 Isoelectric Point: 8.4883 |
| Chromosome | Chromosome/Scaffold: 04 Start: 1803421 End: 1814679 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 141 | 282 | 8.8e-34 |
| LRREPLTFTSSICNHEHKRVKKHMVKRRSDYNKDKNHWLILEDVNNLSIDGSSAGIIDHNGKIWWQNSCKIDRSKALTLYNLKNLNVKNLRVRNALQIQI SIEKCNNVYVKNVEITAPDYSPNTDGIHITNTQNIRISNSDI | |||
| Full Sequence |
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| Protein Sequence Length: 459 Download |
| MHESCSFKSL ALISPIRSQT LKTSAVSHRF KGTDGAFCRS SPPCRFVFVS TTSTDSINRR 60 HLLLVASSLD FCSLADLIGS GGCQRQICVD LNSKTVTFEA SLPSCHLRSC LLTSQEGDDS 120 RLVEPLLRDS VSFEKGGAVV LRREPLTFTS SICNHEHKRV KKHMVKRRSD YNKDKNHWLI 180 LEDVNNLSID GSSAGIIDHN GKIWWQNSCK IDRSKALTLY NLKNLNVKNL RVRNALQIQI 240 SIEKCNNVYV KNVEITAPDY SPNTDGIHIT NTQNIRISNS DIGPASFAPV TSDDARGLRR 300 LPLLLSLFLF FSVSSFFVCA IDMLGLLGVV DPGAVADPRL VASVLEIRSG GVFVRWSLGD 360 DNSKAYVSGI NVDGAKLSET DNGVRIKTYQ ESAVQVNNVV YRNISGTSAT DVAIMFNCSE 420 KHPCQCIVLE NVNIKGGTAS CKNVVNVKDQ GTVSPQCP* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-16 | 170 | 454 | 331 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 6.0e-18 | 240 | 458 | 267 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 1.0e-22 | 178 | 434 | 303 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-38 | 169 | 448 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-62 | 169 | 457 | 337 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC02763.1 | 0 | 166 | 457 | 138 | 423 | putative polygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA65072.1 | 0 | 167 | 458 | 140 | 433 | polygalacturonase [Brassica napus] |
| EMBL | CAA90272.1 | 0 | 167 | 458 | 140 | 433 | Polygalacturonase [Brassica napus] |
| EMBL | CAD21651.2 | 0 | 167 | 458 | 140 | 433 | endo polygalacturonase [Brassica rapa subsp. rapa] |
| RefSeq | NP_191310.1 | 0 | 167 | 457 | 139 | 430 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Transmembrane Domains | |||||
|---|---|---|---|---|---|
| Start | End | ||||
| 308 | 330 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EW729503 | 259 | 239 | 459 | 0 |
| EX044047 | 247 | 235 | 443 | 0 |
| EX121191 | 70 | 390 | 459 | 7e-36 |
| EH769878 | 254 | 169 | 415 | 4e-35 |
| EH767961 | 291 | 212 | 458 | 4e-35 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Glycine max | Glyma16g22488.1 | Glyma09g26905.1 | |||
| Populus trichocarpa | Potri.001G108000.1 | ||||
| Prunus persica | ppb019654m | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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